RnoINT0048795 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107100196-107101470:-
Coord C1 exon
chr10:107101318-107101470
Coord A exon
chr10:107100322-107101317
Coord C2 exon
chr10:107100196-107100321
Length
996 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGTGTGAGGTCTTTCCCCAGGTG
3' ss Score
6.1
Exon sequences
Seq C1 exon
GTGAGCCGCCACCTGTCCAAACTCTTCGACAGTCTGTGTAAGCTCAAGTTCCGCCTTGATGCTAGCGGAAACCCGATCAAGGTCGGGCTGGGGATGTACAGCAAGGAAGACGAATACATGGATTTCGATAAGGAGTGTGACCTCTCGGGGCAG
Seq A exon
GTGAGCCTTGCGGGGAGGGGCTGTCATCTGGTCATCCACCTCTCAAGGAAATTCTTGGGAACCTCTTTTTATCCGATGCATAAATGTAGTTATTTGTGTTGGGGTCGGGGGAAGTCATATGCAAGTGGAGGTCAAGAGGACAATTTTGCGGACATGGTTCTCTCCTCCCATCTTATGGGGATTCCGGGTATCAAACCTAGGTCACTAGAGTCATGCCACAAGTGCCCTTACCCACTGAGGCATCTCGCCAGCATAGGTGGGTCATTTTTTCACTGCTCTATGGGAAACATTAGCATCTTCGCCCCTGACAGACATGTTACTGGCAGTCTGCTGCCTAGACGGAGCTTCCAAGTCCTTGGCGTCTTGTTCAAAGAGTTGAAGCTCTCACACAAGTGATAAAACCAGCAGGCGGGGGTGTGTGTGGGGGGGAATTATTTAGAAGCAAAGCAAAGGAATAGAGTAGACAGACACACAACAAGGGCAGCAGGCACTAAAATAAGAGGCTCAGAATTCTGGCTGAGCACCGACAATTCGCTTGTGGGTCCAGGTGGAGGGGGAGTTTGGTTGTTAATCCCTGATTTTGAACGTGTGCATGCCCATCACGAAAACCCATAAGATGGCTACAAAGGGGTTTTCTTGAAAAGTTGAATCAGAGTACCTTCTGCCTCGCTGCCTATGTACCCAAAACTGCTTCTGGACCCGGGATGTGTTCGGTCACAGGGAGGAAGCTACAAGGGTAGCCATAGGTCAGCGATGGTGGTCTGTTTAGAGAGGGGCGTGGGTGAAGCTCAGCACAGGTGGCGGACCCAGGTGGCCGACCCAGGTGGCGGACCCAGGTGGAGGACCCAGGTGGAGGACCCAGGTGGCCAACTGCTTTGCTGGGAAAGGACTGCACTGTACGGAGGCCAGGACAGGCAGGGTGGCTCCATCCGTCTCAGGTGTAACAGTCACTGGGATGAGCTACAGCTGTGAGGTCAGTGTGAGGTCTTTCCCCAG
Seq C2 exon
GTGGAAGTGTGGCTGAATCGAGTGCTGGACCGAATGTGTGCCACGTTGCGCCACGAAATCCCAGAAGCTGTGGTGACTTACGAGGAGAAGCCCAGGGAGCAATGGATCTTTGACTACCCGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.1=100)
A:
NA
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCTGTCCAAACTCTTCG
R:
TGGGCCGGGTAGTCAAAGATC
Band lengths:
271-1267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]