BtaINT0050345 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54351840-54353398:+
Coord C1 exon
chr19:54351840-54351992
Coord A exon
chr19:54351993-54353272
Coord C2 exon
chr19:54353273-54353398
Length
1280 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGA
5' ss Score
7.75
3' ss Seq
CCCCGTGGCTCCGTCCCCAGGTA
3' ss Score
10.43
Exon sequences
Seq C1 exon
GTGAGCCGCCATCTGTCCAAGCTCTTCGACAGCCTGTGTAAACTGAAGTTCCGCCTGGACGCCAGTGGGAAGCCGCTCAAGTTCGGCCTGGGCATGTATAGCAAGGAGGACGAGTATGTGGACTTTGACCAGGAGTGCAACCTCTCGGGGCAG
Seq A exon
GTGCGAGCCGCCGCGGGACGCGCAGAGCACTGCCCTGGGGATGGTGGTGCCCCGTGACCGGGACCGCGTGGCCAGACAGGCTGTCAGCAGCAGCCCGTGGCCAGCCCTCTCTCCTCTTCTCTCAGCCTTGCAGAACAAATGCTTAAGGGACGTCTTTATAGGAGTCCCTGCACAGCCTTACCTATGCAGTCTGAGGTGACCCGTGAAAAGAAAGGAAGGAGAAAGGAGGGAGGGGGAAAGGGAGGGAGAGAACAGATTTATTAATGCCCTTAAATCCTCATCGTTTTATTATTATTAATGCCAAGGGGGCCACTTTGGAGGGTGCCTTGCACACCTGCCAAGGTCTCATCCCTGTTCAGCATGATGGGCTTTACAGCTTCCATATTTAGCAGAGGGCTCCTCTTACCCTGGGCAGCCCAGCCCCAGTCCCACCTCCCCAGCCCGGGAGGCTTCTCCCTTCTGCTGACAGCAAGCTTCCTGGCTGCCCTCTCCCCCATCTTTTTGCCCAAGTATTATTCAAGCATCCAAATCAATTCTTACATTTTGCCTAAGCAAAATGTAATTTGGAGGTAAATTGGCTTGGGGCATTAAAAATCTCACGCGAGAAAACTCGAGCTCCAACAAGTTGAATTCGGAGTGCCTGGCCGGACAGGGTGACGCAGGATCCATTCATCGGTTTGTTCAGACACTTCCCACACTTAACCACTTACAGACATAACCACTGAACTACAGCCTGCACTGTGCTTCTATCAATAGCTTAAAAGAAAAACCAACCTGATTATCCCATTCAGGTATTTTCCCCCTGGTGGCAGTTAGTTGAAGGTTTGTATTTCAAAATACACGCAAGGGTCATCAGCCAGTTTGTCCGCGTGACAAAGAATGCCCTTGAGGACAAGTGGGGCTCTGCTGGTCAGAATCCGCCTGGGACAGGGGGCAGCAGGGCCCGGGGGACAGATGCCCTGTCCCGGAACATCAGCACTACTTCGTGGGCTCAGACACAGACTGTCTTCTCTAGCTTTTTCTCTCGTTCCCTATCCCTTCTGTGTTTAGACACAGTGATTGCACACGAAAGCCCAATGCAACTAGTTTTGTGGGTACAGCGAGGCTTGCTGAACACATTTTTCCAGCAGGGCATTCTTACCGCTCAGAAAACCTGGGCATTTCTACCCCTGGAATGATGATACGGATGAGGACAAGTGGTAATTGATTTCGTAAATGTCAGAGCAAGTCATCGGATGAGACATGCTCACCCTCTCTGGTCCCCGTGGCTCCGTCCCCAG
Seq C2 exon
GTAGAGGTCTGGCTGAACCGGGTGCTGGACAGGATGTGTGCCACGCTCCGCCACGAGATCCCCGAAGCTGTGGTGACCTATGAGGAGAAGCCAAGGGAGCAGTGGATCTTTGACTACCCCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.1=100)
A:
NA
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCGCCATCTGTCCAAG
R:
CTGGGCGGGGTAGTCAAAGAT
Band lengths:
278-1558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development