GgaINT0129588 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10079579-10080322:+
Coord C1 exon
chr18:10079579-10079731
Coord A exon
chr18:10079732-10080196
Coord C2 exon
chr18:10080197-10080322
Length
465 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TCACAGATCCACACACACAGGTG
3' ss Score
3.09
Exon sequences
Seq C1 exon
GTGTCCCGTCACCTCTCGAAGCTGTTTGACAGTCTCGCTAAGCTGAAGTTCAAGATGAGCCCGGACAAAAAGCCGCTGAAGACGGCCCTGGGGATGTTCAGCAAAGAGGAGGAGTTTGTGCCGCTGAGCGCAGAGTGCGATCTGTCCGGGCAG
Seq A exon
GTCAGTGGGGCTGGGAGCTGCTGCACACGGGGTGGGGGCTGTGGAGCCTGGGCTGAGAAGAAGCCTAGAACAGAGCAATGGAGCCATGGAGAATGCCAAAGCACTGAGCCATGCAGCCCCTCGGGCGGTCCATCTGCTCACCCCCCCTTCGTGCTCCATAAACTGCAGTTTGCACTGTCAGATGGGCCTTTCATGCAGCCTTTTATCAAGTGGGGAGAGCAGTGCTGAGCAGTGCCTCAGGTGCCACCAGCACGGTGTGCAGGGCGAGCAGCTGCGTGCATCAGGCACGCATAGTGTGTGCTCCCTGGCCCTATGTCCCCTCCTTTGGGCACAGAGCAGCGGCTCTGGTCGCCATGCGGGCTGCTGTGAGCCTGCAGCAGGAGGGCAGTTCCATGCCAGCAGCTTAACCTGCATGTGGCCAGAACTGAGCAGGGCTGGGAAATGCTCACAGATCCACACACACAG
Seq C2 exon
GTGGAGGTGTGGCTGAACCGCGTGCTGGACAGCATGCGCTCCACGCTGCGGCACCTGATCCCCGAGGCCGTGGCCAGCTATGAGGACAAGCCACGGGAGCAGTGGGTGTTTGACTACCCGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.1=100)
A:
NA
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCGTCACCTCTCGAAG
R:
CTGTGCCGGGTAGTCAAACAC
Band lengths:
278-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]