DreINT0058315 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10416127-10416535:-
Coord C1 exon
chr6:10416458-10416535
Coord A exon
chr6:10416260-10416457
Coord C2 exon
chr6:10416127-10416259
Length
198 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGTGTTTGTTTGTGGGTCAGATT
3' ss Score
6.42
Exon sequences
Seq C1 exon
GTGACTCAACTGGAGGAGTTGCTGGCAGTGAGACACTCCGTTTTCGTAGTAGGTGGTCCTGGATCGGGAAAAAGTCAG
Seq A exon
GTGAGTCTAGTAAATAGTTGAAGTAAGGCTCAGATATAAATGTTTTGTATTGTGATAACCATTTGAGTTTCTTAGTCAGTGTGTTTGCTATTAGTTGCGTTTCTAACACAATACAAATGTCAGTGTTTCACAGCTCAAATGTTAAAATATTAAATTGACATCACTTAAGGTTGAATTATGTGTTTGTTTGTGGGTCAG
Seq C2 exon
ATTTTGAAGACGCTTCATAAGACCTACTCTAACATGAAACTGAAACCTATCTGGACTGACATCAACCCTAAAGCTGTCACCACTGATGAGCTGTTTGGCTTTCTCCACCCAGCCACACGGGAGTGGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(9.5=50.0)
A:
NA
C2:
PF077289=AAA_5=FE(32.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGAGGAGTTGCTGGCAG
R:
CATCTTTCCACTCCCGTGTG
Band lengths:
204-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]