GgaINT0129601 @ galGal3
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
NA
Coordinates
chr18:9755025-9755398:+
Coord C1 exon
chr18:9755025-9755162
Coord A exon
chr18:9755163-9755260
Coord C2 exon
chr18:9755261-9755398
Length
98 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
3' ss Seq
GCAGCAGTCCCATCCCGTAGGTG
3' ss Score
4.64
Exon sequences
Seq C1 exon
GTCATCAAGCAGTCGGTGCTGGAGCTGAAGCTGCAGGCGGAGGAGAGCTTTGTGCTGAAGGTGGTGCAGCTGGAGGAGCTGCTGCAGGTGCGGCACTCCGTCTTCGTCATCGGCAACGCCGGCTGTGGCAAATCCCAG
Seq A exon
GTAGCAGCCAAACACAGCCAGGGGGGGCTGGGAGCTGGGAGAAAGGCTGCAGGCCCTACAGGAGCTGCCACCAGCACTGCAGCAGTCCCATCCCGTAG
Seq C2 exon
GTGCTGAGGTCACTCAACAAGACGTACCGCAACATGAAGCAGAAGCCAGTCACTGTGGACCTCGACCCGAAGGCTGTGACCTGTGATGAGCTTTTTGGGGTTATCCATCCATCTACACGGGAGTGGAAGGATGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(21.7=28.3)
A:
NA
C2:
PF077289=AAA_5=FE(75.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGCTGAAGGTGGTGCAG
R:
CATCACAGGTCACAGCCTTCG
Band lengths:
178-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]