GgaINT0129601 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10083288-10083656:+
Coord C1 exon
chr18:10083288-10083425
Coord A exon
chr18:10083426-10083523
Coord C2 exon
chr18:10083524-10083656
Length
98 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
3' ss Seq
GCAGCAGTCCCATCCCGTAGGTG
3' ss Score
4.64
Exon sequences
Seq C1 exon
GTCATCAAGCAGTCGGTGCTGGAGCTGAAGCTGCAGGCGGAGGAGAGCTTTGTGCTGAAGGTGGTGCAGCTGGAGGAGCTGCTGCAGGTGCGGCACTCCGTCTTCGTCATCGGCAACGCCGGCTGTGGCAAATCCCAG
Seq A exon
GTAGCAGCCAAACACAGCCAGGGGGGGCTGGGAGCTGGGAGAAAGGCTGCAGGCCCTACAGGAGCTGCCACCAGCACTGCAGCAGTCCCATCCCGTAG
Seq C2 exon
GTGCTGAGGTCACTCAACAAGACGTACCGCAACATGAAGCAGAAGCCAGTCACTGTGGACCTCGACCCGAAGGCTGTGACCTGTGATGAGCTTTTTGGGGTTATCCATCCATCTACACGGGAGTGGAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(9.5=28.3)
A:
NA
C2:
PF077289=AAA_5=FE(32.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGCTGAAGGTGGTGCAG
R:
CATCACAGGTCACAGCCTTCG
Band lengths:
178-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]