RnoINT0048806 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107089880-107090776:-
Coord C1 exon
chr10:107090639-107090776
Coord A exon
chr10:107090013-107090638
Coord C2 exon
chr10:107089880-107090012
Length
626 bp
Sequences
Splice sites
5' ss Seq
CAGGCATGT
5' ss Score
2.05
3' ss Seq
TGGATGCTCCCCATCCTCAGGTC
3' ss Score
8.68
Exon sequences
Seq C1 exon
ATCATCAAGCAGAGCATCGTGGAGCTCAAGCTGCAGGCAGAAGATAGCTTTGTGCTGAAAGTCGTGCAGCTGGAGGAGCTGCTTCAAGTTCGACACTCAGTATTCGTCATTGGGAACGCAGGCAGCGGCAAATCCCAG
Seq A exon
GCATGTAGCCAGCACTCATGGGTTCCCCCATCACCTGCCTCCCTGACGCCTGACGCTCACACACTCCTGTCCCCACCCCTACCCCCTCAGCATTGCCTGGGGCCATGGTGAACTCTGGAGGGTGACAGCCAACACCACCAGTGCTAGTAATAAGTAAGCCAGTCAAGTGCGTCTGGCTGAATGCCCTCAGGACGGGATCTTTACCCTCTACAAAACCCATTTCTGAAAACACAGGGGCTAGGGGTTAGAGATGCTGGGTACAGTGGTGCACACCTTTAATTCCAGTGCTCAGGAGGCAGAAGCAAGTGGATCTCTGTGAGTTCAAGGCCAACCTGACCTACATAGAAAGTTCTAGGTCAGCTGGCTACATGGTGATGTCTAACTAAGAAAATGTCAAGTCACAAATGACAGCAAGTTATTGTTTAAAAGGCAAAAAACTGTGCGTGGTGCTTTAAAAAGAAAAGAAGCATGTGCACACACAAAATATCACTCAGGTGTCCTTACAGCCAGTTTCTCTGAGTGAAAAGCATCTGGGGCTGCACAGAGGGCTGCCTCGTGCAGGTGTGCATCAGGCGCCCCCTACAGGTGCTATGACCGTTGGATCAGTGGATGCTCCCCATCCTCAG
Seq C2 exon
GTCCTCAAATCCCTCAACAAGACCTACCAGAACATGAAGAGGAAGCCTGTGGCAGTGGACCTGGACCCAAAGGCTGTCACCTGTGATGAGCTGTTTGGTATCATCAACCCGGCGACCAGGGAGTGGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(9.5=28.3)
A:
NA
C2:
PF077289=AAA_5=FE(32.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAAGCAGAGCATCGTGG
R:
CATCTTTCCACTCCCTGGTCG
Band lengths:
270-896
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]