MmuINT0050762 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117942027-117942925:-
Coord C1 exon
chr11:117942788-117942925
Coord A exon
chr11:117942160-117942787
Coord C2 exon
chr11:117942027-117942159
Length
628 bp
Sequences
Splice sites
5' ss Seq
CAGGCACGT
5' ss Score
2.9
3' ss Seq
TGGATGCTCCTCACCCGCAGGTC
3' ss Score
10.09
Exon sequences
Seq C1 exon
ATCATCAAACAGAGCATCGTGGAGCTCAAGCTTCAGGCAGAAGACAGCTTTGTGCTGAAAGTCGTCCAGCTGGAAGAGCTGCTTCAAGTCCGACACTCGGTCTTCGTCATTGGGAACGCGGGCAGCGGCAAATCGCAG
Seq A exon
GCACGTCACCAGCACTAGTCGGTAACACACACACACACACACACACACACACACACGCACGCACGCACGCACACATCACCTGCCTCCCGGAGGCCTGCCACTCACACACTCCTGTTCCCCAGCAAGGCCTGGAGCCATGGTGAACACCTGGGGGTAGCAGCCAACATCACCAGTGCTAGCAATAGGAAGCCAGCCAAGTGTCTGTCTGAACGCCCTCAGGCAGGATCCTTACCCTCTTATGAAACCCATTCCCTAAAACACAAGAACTAGGGGATAGAGAAACTGGGTGTGGTGGTGCACACCTTAATTCTGGCGCTCAGGAGGCAGAAGCAGGTGGATCTCTGTGATCTGTGAGTTCAAGGCCAGCCTGACCTACATAGAAAGTTCTAAGTCAGCTGGGCTGCAGGACAGTGTCTAAGAAAATGGCAAGTCACAAGGGAAACTGTGCATGGCGTCTTAAAAAGAAATTTGTGCACACATGTACACACACACACACACACAAAATATCCTCAGGTGTCCTTAAAATCAGTCTCTCTGAGTGAAAACCGTCCAGAGCTGCACAGAGGGCTGCCCCGTGCAGACCGTCCCCATACAGGACATTGAGCCAGTGGATGCTCCTCACCCGCAG
Seq C2 exon
GTCCTCAAATCCCTCAACAAGACCTACCAGAACCTGAAGAGGAAGCCCGTGGCGGTGGACCTGGACCCGAAGGCTGTCACCTGTGATGAGCTGTTTGGCATTATCAACCCGGCGACCAGGGAGTGGAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:41
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(9.5=28.3)
A:
NA
C2:
PF077289=AAA_5=FE(32.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAAACAGAGCATCGTGGA
R:
CATCTTTCCACTCCCTGGTCG
Band lengths:
270-898
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: