DreINT0058845 @ danRer10
Intron Retention
Gene
ENSDARG00000032238 | dnm3a
Description
dynamin 3a [Source:ZFIN;Acc:ZDB-GENE-040724-76]
Coordinates
chr20:14944422-14947698:-
Coord C1 exon
chr20:14947534-14947698
Coord A exon
chr20:14944658-14947533
Coord C2 exon
chr20:14944422-14944657
Length
2876 bp
Sequences
Splice sites
5' ss Seq
AATGTCTGT
5' ss Score
-1.87
3' ss Seq
TTTCTGTTCTTTACCAATAGGTA
3' ss Score
11.36
Exon sequences
Seq C1 exon
GCAGATGGAGATGGTTCAAGCCAGACGGAGAGCTTCTCTATGGACCCTCAGTTGGAGCGTCAGGTCGAGACCATCCGCAACCTGGTGGACTCCTACATGAGCATCGTCTACAAAAGCATCCGAGACCTGATGCCCAAGACCATCATGCATCTTGTCATCAACAAT
Seq A exon
GTCTGTGTCCTCTGTTTCTAACAGTGATATAACATCTAATGTAAAAATAAAAAAATCTATAGCTTAAAGGAGCTAATAAATTTGACCTTAAAATGGGTTCCAAAAAAATAAAAACTGCTTTTATTCTAGCCAAAATAAAGCAAATTAGACTTTTTCCAGAAGAAACAAATATTATCAGACATACTGTGAAAATGTCCTTGCTCTGATAAACATAATTTGGGAAATGTTTAAAAACAAAACAAAGAAAAAAAATTCAAAGGGGGCTGTTATTTGAATCATTGCGGAAATGTGTGCATGCAGTTCTCCAAGCTCATTTAACACACAATTGTTATTCTCAGTTGCTTTGGTGCATTTCTCACAACACTATTTACATTTGCACAGCAGTTAATGCATTTCTCAAACAATTAGTTATTTGTAATGTAATGTAATGTAATGTGTATTTACATAGCGCATTTATTGTGTATGGCCATTCACCCAAAGCGCTTTACAATCATGAGGGGGTTCTCTCCACACCACCACTAGTGTGCAGCATCCACTTGGATGATGCGACAGCAGCCACAGGACAACGGCGCCAGTGCGCTCACCACACACCAGCTATTGGTGGAGTGGAGAGACAGTGATCGAGCCAATTCGGTGGAAGGGGATGATTGGGAGGCCATGATCGTAAGGGCCGATAGAGGGACTTTCACGAGAAGTGCCATGGGATTTTTAATGACCACAGAGAGTCAGGACCTCGGCTTAACGTCTCATCCGAAAGACGGCGCCCACTGACAGTGTTGTGTCCCCTTCACTTTTACTGGGGCATTAGGACTCACACAGACCACAGGTTGAGCGCCCCCTGCTGGCCTCACTAACACCACTTCCAACAGCAACCTAGTGTTCCCTAGTGGTCTCCCATCCAGGTACTGACCAGGCTCAGCCCAGCTTAGCTTCAGTGAGTAACCGGTCTTGGGCTGCAGGGTGACATGGCTGTGTGCACATTATAGTAGCAGTATTTCGTTCATTCCTTCCAACAAATTGCAAATGCTTTTGGACATGCATCAATTGCTTTCTTAAAACTCTCTGCTGTTTTATAACATTATCATCTGCTTATGTCATGTCATTCAAAATTAACTAAACTTGTGAATGCTGAATAGTCATTCCAATGAAAAACTAATAGTCCTCATTTCATTACTGGAGTCATTGCATACAGAAATACTGAACTATTTTTCAAAATCTGTCAAGCAAATTTTATTAAAAAAGTTTAAATCTTTTTTTCCTGAAAATACCTTCAAAATTAAACAATTTCATGAATGACTTACAGACCTGTGTGTGTTGTAGGTTCGGTTCCAATATGTACTGCAATATTGTTAACAGTTGTGCACAGTTTGACCCAAAGAAAGTTTATGTTTGTTGTAAATAAGGGTGTATTTATTCTGTTGCACAATGCTGTGAATAAATTAAAATTGTAAAGAGCAAATGCAGTAAAAATGTGAAACATACATATTCAGTGTCTTGTACTCGGGTACCTCACTAAATGCAGTGATGTCTAACTTTACTGGAGTTTTTAAATGGCTGTGCAAATAGTAAATTGTGCTGTCTTGAGCATTTTCAGGAAGAGTCACCAAAATCTGACTTTTTTTGCATTGGGAAAACTGGAGTAAACTCATAATGAAAACATGACAAAGCCATTTAACTATCTTGTTCATAAACAATGGTGTCGGGACTTTTCATCTTGATGACATTGACACTTAAATTGACATATAAAAGAATACTTGCTTTTTAGGAATGAGCTATCCATTTTGAGCAAGTGACATCCTTTTTGAAGTTATCAACTATGTTTTGCAGTTTGTACCAATTGTTTTGAGAAATACATCAACTGTTGTGCAAATGTAAATAGTGTTGTGAGAAATGCACCAAAGTTACTGAGAAAAACTATAATTCTTTTTACACTGCACTATGACTTTATATTCTATACTGTACATAATTTTTGTTAAATGACAAGACTAATAATTAAATGTCAATAATTATAATAACTAAATTATTAAAATAATAATTACAAAAATCAAGGCTAGATCAAATTTTATTTTGGTAAAATAAGCATAATCTAGAGCTCTTTACCTTTCATATAAGCCACTTCTGTCCTAAAACATGAATAGGCGACAAAATTTTGTCAGGTAGTGTATATATGCATACTTCAGAATTACACTACTGAAGTATGCTTCTATACTGCACTTTAAGTGTTGTATATGTTTCTCACCATAGGTTAAGTTAGTTTGAAATATAGGTTTTCTGAACTTTGGAGTAACTAGAGTAAAAAATTAGGCATTATTGTGCAATAATATTGTATAACGAAATAATACATTTTTGTGTGATTACATGTACCATCTTATTGTCTGGTCAATTTATATTTCTCAAAATAGTTGTTGAATATTTAGTTTGACTTTGGACTTTTATACCAAGGGACATCATTAACTAAATAGATAGCTATTTTATTTCAGTTTTCTAAGAGTATGGCAAAGCTCAAAACACATTTATAGCAATATCAACAGAGGAACTGTGGAATTCATTTCAGAATTTTTAGAACCAATCAGAATCCACCTAAAAAGCTTGAGCACTTACAGTACAGTACAGTGTCAGACAATAGAACTGCAGTAAAGCTGCTTATGGTTTGGTCCTCAATGTAGTTGACATTATGGTTAAAATGGGCCTATCGGACAAATTGGTGAGATGATGTGTCAGTAAATGCCTGTTCTGCTAGTCAGAATAAAACCACTTTATAAAGAATATATATATATATATATATATATATATATATATATATATATGTAATCATCAGTCTCTACATCATATTTCAGTATCAAACATACCTTTATTTTTCTGTTCTTTACCAATAG
Seq C2 exon
GTAGAAGAGTTCATCCACTCTGAGTTGCTGGCTCAGTTGTATTCTTCAGGAGATCAGTACTCTCTGATGGACGAGTCTCCTGAGCAAGCCTTGCGCAGAGAGGAGGTTCTGCGTACCCATGCTGCCCTGAAAGAGGCTCTGAACATCATCACTGACATCTCCACCACCACCATCTCCACCCCGCTGCCACCTCCCGTAGATAACTCCTGGCTATCCAGTGGCTCGCTTCACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032238:ENSDART00000152641:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=NA C2=0.407
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(38.0=100),PF0221213=GED=PU(41.3=69.1)
A:
NA
C2:
PF0061614=RasGAP=PD(4.2=7.6),PF0221213=GED=PD(56.5=65.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]