RnoINT0049867 @ rn6
Intron Retention
Gene
ENSRNOG00000026490 | Dnm3
Description
dynamin 3 [Source:RGD Symbol;Acc:727949]
Coordinates
chr13:79928400-79936582:-
Coord C1 exon
chr13:79936418-79936582
Coord A exon
chr13:79928627-79936417
Coord C2 exon
chr13:79928400-79928626
Length
7791 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TCACCTGGTTTTTCTCACAGGTT
3' ss Score
10.64
Exon sequences
Seq C1 exon
ACTGAAAATGATGAAAATGGACAAGCAGAAAACTTCTCCATGGACCCGCAGTTGGAGAGGCAAGTGGAGACTATTCGCAACCTCGTAGACTCCTACATGTCGATAATCAACAAATGCATCCGAGACCTAATTCCAAAAACAATAATGCACCTTATGATCAATAAT
Seq A exon
GTAAGTCTCTATACACTTCTCGAAACTGAGCGCCTTTTCCTGAGTGTCTCTGTGATATTTTCTGAATAACTGTAGCACTTACTGCCCAGTCTGTAGCTCTGCCTTTATAAGTGGGTGACCAACAAGGGGAGAGACCAGAGAGGAAATTTCCAGCTACAGCATCGACTTGCTGTCTACCGTGTATATTCATGGCCTTGCCAAGTTAGCGATGAAATCAGATGCCAGTGCTCCTAGATTTTGAGTTTAAGGCCTAATGCCATAATATGATCATTTTTATCATCTACAAACGGTGACGTGTGCTTTTCACCTCGGAAAGGACATCTTACCTTAATCCCTGACTATGCAGTCAGTCATATTGTCTTTGGGAGGGCAGTTTCTTTGAGACAGGGTTTCACTGTGTAGCTTAGGCCTAGCTGGAACTCAAGGTATCCTTTCCTACTCAGCCTCCCCCAGGCTGGGATTCCACTATGGCCATCTCAGCCTGGCTTCCTAAGGTCAAAATGCTACAACCACCAACCTTTCAGAGCCCTGCTACTGTAGCCATTCAAAAACTATTGGTTTTGTTTGGCTCTTTCCTTCTTTGATTGGTAGCAGTCTGGATGCGGTACTTAAAAAAAGAAAGATTGTGTGCATTCGGTACACATAGCAAAAGTAGTTATTAGAGAAGGTAGCTTTCCCGACTCCTAATAAAGGGGGAAGCCACTTTATTTATATGCATCTTCTCATGACATGTTCTGCTTTCAGTATGTTATGAACATAGCTTGTGAGAATTCAAAAGTCAGACTGTCAAACTGAAAAGTACCCTAAACTAGAATTCAAGGAGAAACCTGGCTCTTGGGCTGTTGGCCTAATGTGACCAACCGGCCAATTCGAGTGTGTGTCCTCCATGTGTAAACCACTAGCGGTAGTAAGTATATCTAACTTGAGGATTTGCTCCAGAAGAGTAGGGTTCGCCAAGGTACTGTGGTAAAGGTAAGTAGTTAATATGGCTACCAGTCATTCTGTGTTTCAAGATTCCTTTCTAAAGTTCGTGAGGATCCGCTTGTATTTGACCTCTAGCGTTGTATATGCCTTGATGTTAAGAAGCCCTGAGTTCTCGTGTGAACAAACTTGTATCCAAGTAAGACAAACACGATGCTTTGAAGTCCGCGCAGCAGGTAAGGAATGAGCTGCAAAAGTAGAAACTATAAATATCACTGTGGTTGGTCAGTGGTCAGCTGTCTGACCTGAGGTGAAGCCCGTAGCCCCTCTGAGTTCAAGTCTGTCAGTTCTGGAACTTCAGCGGGAGCATGAAGGGACCTCACCAGACCCATTAGAGCATGACAGATGTGGCTGCAAGCCATTGAGACAAATCTGAAGTACTGAGGAAATAGTCTGTGTGTCTTCAAAATTACCCTCTTAACTCCGCGTCACGATTCAGGTTGTTTGCTGTGGTGTAGCAGGCACTTGCTTATTTAAACATTTTCCTGATTAGGGATCATTTATCTTTCTACCATTTAACCGGGAGTCATTACTCCTGCCTTCGGTTCAAACTCCCCTTTGCTCTGCGTTATATTAAATCCTCAGCACAGGAAAACATACTTCCTGTCTGTGGCTCTGAGAAGTAGCTTAACACAAATTAGCCAAAAGGAAGGGAAGAAAAAAAAACCCTACTACAAAACCTGCTTAATTTCCCTGCCTCCTCTATGCTGGAATCTACTTGCTTTAACAAAATGTCCAAACACCCACCTAGCAGAATATTATTCTTGGAGGAGGAGTTCTGCCAGTTATCTTGAGAAAGACCTCACATACAAGTCGTGGGAAAGGAGACTTCAGTTCAGACCTGATCTCCAGGGTCAGATGGTAAAGCAGAGACTAACAGGACTGTGGAGAAAGCCAAACATGCTGCATTCTTCTGAGGTGATGGCTGTCTATGCTAGAAATGTAGCTTTTGCATCTAGCAGAACTGAGTTCAGATAGCACAGTGATGATTTGTCTTGAGTCTTATTTTACTTCTGTTTGCCTGTATATAAAAACACTTCATGTGTATTTTATATATTTTTCAAATAGAGAGTGAAATCTTTTTAAAACAAGAAACTTACATTCTCATGGCATCTCAATGCTCAAGCCTTTCTGTTTGGTCCAGATGTATCCTGTTAAATACAAAGGAACAGACCTAATAAATCAATGAGCCTATACCATACAGGGAAACTGTTTTTTTATTTGATTTGAATTGATAGAATGAGAGAATTAGTAACAGAATCACAACTAGCAAAAAAAGTTTGAATTCCACCTATTCTATAAACTGGTATTCCTTCAGAATGAGGAAATGCTGACGCTGGGTTCTCTTGTCTTCTTAGCCCATGGCCTTTCACCCTTGGAGCAGGAATGGCTGGTTGTCCAGCCTCCTGCAAAGGAATATGTTTCAGCCAGCTTTTCATAAAGTTCGGGAATCGGTGGGCAGCTTCCTTTGAAAGTTTACATTAAGTGTTCTGCCACTCAGTTCGCCATATGGAATTGTTTAAGAAGTTTAAAGCCAGGCAATAAATGCCTGGCCTCAGACATACTGTAAGCCTTTGTCTATTGAAACACAGCAGCTGTTTCGTTACTTAAACACACGAGGTAACAGCAGCACAAAGGAACTTCGAGTTTATGACAGGCGGCCACAGGTTCAAGTCGAAGTAGCAAAGCCCTGTGTGGGACTTTAAGACCAGCACACACAACGGTCCCATGGCATGCCCCTCATGGTTCACCCCACCACAGAATGAAGAAGTTTAGCTTTATTCTAAAACATCATGTATGGTAGATAGGTTTCTTTGTTTGCACCCCTGGACATCTTTTATCTCTTCTGTATCTTATACATGGAGAACTGGAGGACTGAAAAGTTTGACATGCCCAAGATGATACAGCTGTGAGTGTCAGAGTCAAAACTGTACTGAGGGGCCTCAGTCTGATGCTAAGTCAGCCCTTGCAACCCAGAGGGCTTCTTCCCCCTACGCAGTATAGCCACAGGGTCATCTCCCCAGAGAGTTCATAGGACTCAAAGATTTAATTAGTGTTCATTTGAACATGAGAAATGGTGTCTATGTCTTCAATCTTAAAAAATTCTGACTCACATCCAAACAAACTCACAAAATGAATCCAAACACAAAATGAAATGCAAAAATTCTTAAAAATTGAAAAAAAAAAAGGAAAACAGAACAAACGAACAAAAAGGATGAAACCCAGAGGTATTACACACTTGCAGTGGTGCTGCCAGGGCCACAGTGGCCCCTGGCCATCCTCTCTCCGGTGGCCCATGGCAGCGTGTCCATAGTCCCAACCTTAAAGAGAACGAGTAGGCTTTCTATTGTCAGCATTTGTGTAGAACATTATTCTAATCTTTAAACCATGATCTGGTTGTATAGGCTAAACACGGCATCTGCTCCCCCCCAAAAAAAAACATTTCACAAGGGGCTCCCCCATCTTCACCTCCAACCAGAGAGAACTCCCACTCTTCCCCTCCATTTTGCTCATCGCTGACCTGAGAATGTTACAGCATGCCGGCTGTGTATCTATTTCCCTGACCTCCTTGTCCAGCCCTGAGAGCCCATGGAGGTTGTATTTCGCAGAAGGAGAACACCAAAGCTAAATCAGCCAGGGGAGAACAGGAGGGCGGCGGTGGCTGAGCGGTTTCACCTCCAGATGAACAAAATGAAATGATTCAGTGAAAACACTAGACACGTGAATGAGCCACACCGCCATTTTACACCGTGACTCCCCCTCAGAGATTTCGGGAACCGGTCTTCCAGACAACCAAACCATCTCTTGGTGAAGGTGTTAAAAACGGCTCGACCATACCAAAGGTTTTAAGAGGCAAACGTCTTTCAGGAGACTAGCGAAGGGTTAAAAGTTAGGAGGAGGAAAACATGTGGAACATTTTTAATGACCTCACATTCCTTTACACTGAGCAGTGGGACGGGGAGCAGCAATGCCTGTTTATTTAGCCCGCAGAGTTTAAGCTGGAATGGGATTTTGTATGTGAGAACTTTTGTGAGCCACACAAAGATGTATAGGTTATAAGGTGTTATAATTAAAAGCATAAATATTGCTCCAAATCTCCCATCCAAGCATAAATGGTCTATTCTGTTCTGTTCACCTAAGAGGAGATCTACTGTGGTGGGTGTACTGCAGAATCCTCGATTTAAATGTTTGTGCCACCAACACCCTAATGGTTCAGAAAGCCCCTAAAGTGTCTGGAAACTCCCCCAAATGTGTCCCCACCCCTATCAACTGTGGTTGTTGTTGCAAACTCCAGTTGTAGCAGTGAAAAAGACTAGGCTAGGCTAGCCAGAAGACAGCCTAAACTTTTCCTTACAGGGAAAATAAAATATTAACCCATGTGGGGTCTTTAAGTGTGTATCTTGACAACTACACTTTTGTAATAGGTTTCTGTAATCCCCTGCCTCTGCCTATCTACTGTCAATTTAGTCCAATAACAGGAAAAATAATAGACTGTGTCTTTCTTCCTCCTATCCACGCCACCTTCTTTCAGAACATTACCAAATGAAGGCATAGTAGTGGAGAGCAGGTTAAGTCTCAGTATGTAACATCAGGACCCATTGATTCTTAATTCAGACCCGTTTTAGAGCTATTCTTGGATCTTTCTTTTTAAATCGTATTTAATAGCTCATGAGTGATACGTAAAGTTTCAAAAGAGTTCAATCCCACTGATGCTTGATGTCAGAGAAAACTGTCTGGTTTAGAGTTTTAAGATGTATCCAAGTGCACAAACATAAACACACATGCCCAACAATGGAAGGTCTGTGCAGATGTCTCTGCACCCCTCCCCCAGGTACCTGCATGTATGTTTAAAAGTGAACAGCTCTTCAAAGACCTTAAGTTATTCCTAAGGCCACTTTTCCTACGTTCCCAGAAAATCTGACTTTCTCTTTTGCCATTTGATTTTCAATTCTCCAACTCAGCCAGACATCAACTCCAGTGACACCTTCCTTCGAATGATCTTTTCTCTCTCATCCTTCTCATGCTGATACCGCAAGATGATTTTTCCTCTGTAGTGTTTGGTCACGTGGACCCATCTTTCCATTCTACTGTGGCATTGAGAAACTCCCACCATTCCATGAATAATGGTAAATAAGAGCCTCCTATCGGGTCCATGTCTACTACTAAACTTGCAATTTTTTTACCAATTAAAGCCAAATTAATTTTCCTAATGACCTGTTTCACTCACTTGTTAAAAGCCTTTCGTCACACTGCCAAGTGGATAAAGTTTAAACACTTCTCATTAGTACCGAGATCTCATATTTTTGTCCTAGACTTGCTGACCAAATTTACTTTCCATACCCACAAGACAATCCCTGAATACAGTGTGCATGACATCGCTCCCATGTTTGGATCACTCTTGGCTTACAAAAATGTGTGCAGGGAACTGTTGATTTCACCACAACCAGGTAAAAACCAACTGATGTTTTTTACCTGAATAGAATTCGTTACATAGTTGAAATCTTTACAAAAACAATGAAACTGGTCCTCTCTCCTATCTCCCCTCCCGTCTCCTGTCAAGAAATAAGATGTACCAGTTCTCTAGACTGGACTTTAATCACTGCTCACTCTGGGCAAAAATAGTGAGGTCAACCAGTTATCTGTCTTCCAATTTGGGCTATGGTTTATGTGTGTTTACCCACAGTGAAACAGATATCTTACCAGAGAGCAACTTGTAAGGAATCAAGAGTCCTTGTTCTCTATCCCTCATGTGGAACCTGAGGACCAAACTCGGGTTCTGAGACTTGGTGGCAACTGTCTTTCTCTACCATCTCGAAGGCTTGTCAACACATATTCTGGGTTAGTCTGTCTCTACAAATCCCTAAAGTGCCCTGGAAATCATAGAGGACTAGCTGGAATAGCTCCACAGAGCTGCGTGCCACCCAGCCCCACTGTGAGCCTAGCCTTGAACCAGGACTGGAAGTTATATTCACAGTATAACTCGTGCTAACGTCTGAGGATTGTATAACAGATAACCTGGACACCTTCCTTCCCGTGGTGTGAACTACATACCCAAGGGCTACAAAAAAAGAAGCCATCCTGTCCCCTTGGCCCTGAGACCAATTGACTCTACCTGCAGCCCTGCCCTTTTGACCTCTTCCAGTGTTCTCAATTTTTAAAAATTCCATTTAAAAAAAAAAAGTGAAGCCATGGGGATCGGAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAGTCCCTAGTAATCACATGGTGGCTCACATCCATCTGTAAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAGTGTACTCAAATAAATTAAAATCTTTTTTTTAAAACATGAAACTGTGTTTTAGAATCTTCTCATTTGAGTAAAACTCCAAACTACAACCTAAGAATTTGAACTGACAGGTATCTTAGCGTCCTTCTGAAGTGTATTCTTGCTTTGGCCTTTTACCTAGATCTAAGTAACCCAGATAAGCTTTCTCAGGTCACTGAGGAACTGAAAACTTCCAATAGGCCTATCTCCTTGGTTTACGGTAATTCTCCTACTTGCCAGCTGCTCTAAACTATCAACGATGAGCAGTGGCTTAGCTCGATGGTGGTGCACACGTATGCCGAGGGCCCTGGACTAGCAGCACAACGCTAAGAGGGCAAAGAAGGAATGATGAAGGAATGTGAATTGCGTTTTCTAGCCATTTACATGGCGTGACATGCTTTCAGCAAATTGAATCAGCACTGGTTAGAAGATTTTTGGGTTGACGTCACAGCTGTGCGATCTCTAAATTTGTTTCTGCATTGTGAGGTTTTAATTTTACCTCACCACTATGTGATGAATCAGATAACTTTTGAAGAAAACTGGGATATATATATATATCCATATATATGAAGATATATATTTCACTGCTTTGTACATTCACTTTCTCACACATAAATGAACATGTACTTATACTTAATGATATCTGGATTTTTTTTTCTTTTCTTTTTTCTTTTTTTTTTTTTTTTTTCCTTTTTTTCGGAGCTGGGGACCGAACTCAGGGCCTTGCGTTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGATATCTGGGTATTTTATTGTACATTAACTGAGACTTTCTCTGTAGTTATATAAAGCACCTGGCTACTGTTTAGATCTGATAAAGCATGGAGACTGGTCAGTCCTTGCCCGTTCTGTGTTGTGCATCCTCTGTTCCCATCCTGCTACGAGATACTGTTCAACTAAGAACAGTCTCTTTTATGTTGCTTGAAATCAACTTGCATAGTTTTATACCTATATAGTTGTGATCAATATCTTATATCCACTTATACTTACTAATTCTGTCTTTACCGTACCTTTAAAACTTTGAATGGGTAATGTTTGATTATTTTGGTAACTATTTAGCTAAAGGACTAGGAATGCTAATAAACAGAAAACTTATACAAAGCTTCCTTTGCATCACCACCTTGTATTCAACATACTGTCAAAAAATTACCTCATGGGACCTTCCTGTCATATAAACCAAGTGACCTCCAAGAACTTCATGAGGCATCCGCATAGCTGCTGAGCCATATGCTAGGGGTAGCAAAGTCTGAACGTTTTTTTTGTTAGCTTTACGATCATTTCTTTGAAAGACAGAAGGCAGAGGGAGAAAGCTGTCCTCTGTACCAGAAAGGTGGCAAAAACCAAACAGTCGTATGGTATTTCCCTTTTCTCCGGGAAGACCTTGTGAGCGATTGCCACGGAGCCTGTGTGTTGCCCTCTCACCTGGTTTTTCTCACAG
Seq C2 exon
GTTAAAGACTTCATCAACTCTGAACTCCTAGCACAGCTCTACTCCTCTGAGGACCAGAACACACTAATGGAAGAATCCGTGGAGCAGGCTCAGCGCCGGGATGAGATGCTCCGGATGTACCAAGCCCTGAAAGAAGCCCTCGCGATCATTGGCGACATCAACACGGTCACTGTGTCCACCCCAGCCCCACCTCCAGTAGATGACTCCTGGCTCCAGCATTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026490:ENSRNOT00000067653:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.285 A=NA C2=0.557
Domain overlap (PFAM):
C1:
PF0221213=GED=PU(41.3=69.1)
A:
NA
C2:
PF0221213=GED=PD(56.5=68.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]