MmuINT0051811 @ mm10
Intron Retention
Gene
ENSMUSG00000040265 | Dnm3
Description
dynamin 3 [Source:MGI Symbol;Acc:MGI:1341299]
Coordinates
chr1:162011701-162019992:-
Coord C1 exon
chr1:162019828-162019992
Coord A exon
chr1:162011928-162019827
Coord C2 exon
chr1:162011701-162011927
Length
7900 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
TTGTTTTCTTTTCCTTACAGGTT
3' ss Score
13.07
Exon sequences
Seq C1 exon
ACTGAAAATGATGAAAATGGACAAGCAGAAAACTTTTCCATGGACCCACAGTTGGAGAGGCAAGTGGAGACCATACGCAACCTAGTAGACTCCTACATGTCAATAATCAACAAATGCATCCGAGACTTAATTCCAAAAACAATAATGCATCTTATGATCAATAAC
Seq A exon
GTAAGTGATTGTAAGCTCTCTCCTTTTAGCCTCTAACCCCTCCGTGCCTGGAAACTGAGTACCTTTTCTTGAGTGTCGCTGTGATGTTTTCTAAATATCTGAAGCACTTACTGCCCAGTATGTGGCTCTGCCTTTGTAAGGGGGCGACCAATTTAGGAGAGATCACAAAGGAAATGTCCAACCACTGCATCGACTTGCCTCTAACTGGCTATCTTCTGGGAGGGTGCAGAGACTACCATGCTCATGGCCTTGCAAAGCAAGATGAAATCAGATGCCAGCACTGCTAGGCCTTGAGTTTAAGGCCTACACCATATATGTTAAAATGATCATTTTGATCATCTATATCAACGATAGAATGTGCTTTTTACCTAGGAAGGGGCATCTTACCTTAATCCCTGACACTGCAGTCAGTCGTTTTGGTTCTTTGGAGGGCAGTTTTTTGAGACGGAGTTTCATTGCGTAGGATAGGCTTACTTGGAACACAAGGTACCTTTCTGGCTCCACCTCCCAAGTGCTGAAATTCCAGTGTGAGCCACTATGTCCATCTCAGCCTGGCTTCCTGAGGTGAAGATGCTACAAACAACAATCTTTCAGAGCCCTACTACTATAGCCATTCAAGAACTATTGGTTTTGCTTGGTTCTTTCCTTCTTTGGTTGGTGGCAATCTGGATGTGGCACTTTAAAAAAAAATAGACAAATTGTGCAGGTTAAGCACAATTGGCAAAAATAGTTATTTATTAGAGAAGCTGACTTTTCTGAATCCTGATAAAGGGGAACCAACGGCCTTATTTATATGTGTCTTCTCATGACATGTTGTGCTTTAAATATGCTATGAACATAGCTTGTGAAAATTCAGAAATCAGATTATAAAACTGAAAAGTACCCTACACTAGAATTCAGGAGAATCCTGGTTTCTAAGTCTATTGGCCTAATGTGACCAATTGACTGCTATGGGTTTGTGTCGTCCATACGTAAACCACTAGCAGTAGTAAGTATATCTGACTTGAGGATTTGTTCCAAAAGAATAGGGTACTGTGGTAAAGTTACGTAATTAATATGGCTATTAGTCATTCTGTGTTTCAAGATTTCTTTCTAAAGTTCACGACAATCTACTTGTCTGTAACCTCGGGAGTTGTCTGTGTCTTGATGTTAAGAAGCCCTGAGTTCTCATGTGACCAAACTTGTATTTGATTATGTTTGTGTATCCAAGGAAGATAAACATGACGCTTTGAAGCTACGCAGCAGGTAAGCAATGATCTGGAAAAGTAAAAACTATAAATATCACTGTGGTTGGTCAGCGGTCAGCTGTCTGACCTAAAGCAAAACCTGTAACCCCTCTAAATTCAAGTCGGTCACTTCTGGAAATTCAGCGGGAACATGAAGGGACCTCACAGACCCATCAGAATGTGACAGATGTGGCTGCAAGCCATTTAGACAAATCTGAAGTACCAAGCAAATAGTCTGTGGGTCTTCAAAATTACCCTCTTAACTTTGCGCCAATGGAGTCAGCTTGTTTTGCTGTGGTATATCAGGCTCTTGCTTATTTAAACATTTTCCTGATTAAGGATCATTTATCTTTCCACCGTTTTACTGAGAGTCATTACTCCTGCCTTCGGTTCAAGCTCTGCGTTATATTAAATCGCCAGCACAGGAAACCATACTTCCTGTCCGTGGCTCTGAGAAGTAGCTTGACACAAATTAGTTAAAAGGAAGGAAAAAAAAAAATCCTACTACAAAATCTATTCTACTTTCACCTCCAAAATTAAACAAAAACAGGCAACGCACACGGGTTACTCTAATTTCCCTAGCTCCTCAATGCCGGAATCTACTTGCTTTAATGAAATGTCCAAACACCCACCTAACAGAATATTATTCTTGGAGGAGAAACTTTGCCAGTTTTCTTAAGAAAGACCTCACATACGAGTCCTGGGAAAGGAGACTTCAATTAAGACCCGATCTCCAGGGTCAGACGGTAAAGCAGAGACTAATAGGAATGTAGAGAAAGCCAACCATGCTGCCTTCTTGTGAAGTGATGGCTGTCTGTGCTAAAAAAATGTAGCTTTTGCATCTACCAGAAGTGATTCAGATACCTACGGTGATGGAGTTCAGATACCTACGGTGATGGCTTTTCTTGAGTGCTATTTTGCTTCTATTTGCCTGTATATAAAAACACTTCATGTGTCCATTACATATTTTTCAAATAGAGAATGAAATCTTTTTAAAACAAGGTACCCACATTCTCGTGGCATCTCAATGACTGAGCCTTTCTGTCCGTTCCAGCTGTATCCTGTTAAATACAAAGAAACAGACCTAATAAATCAATGAGCCTACACCGTACAGGGAAGCTGGTTTTGTTTTGTGTTGTTTTTTTTTTAATTTGATTTGAATTGATAAAATGAGAGAATTAGTAACAGAATCACAACTAAGAAAAGTTTGAATTCCACCTCTCCTGTAAACTGGTATTTCTTTGGAATGAGTAAGCGCTGAAGCTGGCTTCTACAGCCCATGGCCTTTCACCCTTGAAGCAGGAATGCTGTCCAGCCTCCTGAAAAGGAATATGTTTCAGCCAGCTTTTCATAAAGTTCGGGAATCGGTGGGCAGTTTCCTTTGAAAGTTTACATTAAGTGTTCTGCCACTCAGCTCGCCATATGGAATTGTTTAAGAAGTTTAAAGCCAGGCAATAAATGCCTGGCCTCAGACATACTGTAAGCCTTTGTCTATTGAAACACAGCAGCTGTTTCGTTACTTAAACATACGAGGGACCAGCAGCACAAAGGAACTGTGAGTTTATGACAGGCGGCCACAGGTTCAAGTCAAAGCAGCAAAGTCCTGTGTGGGACTTTAAGATCAGCACACATAACAGCCCCATGGCATGCCCTCCGAGTTCATCTCACCACAGAATGAAAGAATCCAGCTTTATTCTAAAATACCATGGACGGTAGATGTGTTTTCTTATTTGCACCCCCTGAACATTTTTTTTCTCTCTTCCATATCTTACACATGGAGAACTGGAGCAATGAAAAGTGACTTGCCCAGGATGACACAGCTGTGAGTGTCAGAGCCAAACCTGTACCACAGGGCTGATGCTCGGTCTGATGCTATCTCAAATTCAGCAGCAGATAAGGGCACAGGGTTGAGAGTGAGAACTCTAAGTGAGCCCTTGCGACTCAGAGGGCGTCTTCCCCCATGTAGTATAGCCACAGAGTTATCTCCCCAGAGAGTTCATAGGACTCAAAGATTTAATTAGCGTTGTTCATTTGATCATTAGAAATAGTGTCTCATTGTCTTCAATCTTAAAACATTCTGACTCACATTCAAACAAACTCACAGAATACAAAGTGAAATGCAAAAATTCTTATAAATTCTTTAAAAACGAAAAACAAAACAAACAAAAACCATGAAACCCAGAGGCATTGCACATTTGCAGTGGTGCTGCAGGGCCCTCTGCTCATCCTCTCTTCGGTGGCACGTGGTAGCATGTGCCATAGCTTCAAGCATATCCTGCAACCTTAAAGAGAACAAAGTAAATTTTTTTACTTTTAACATTTCAGTGAAAAACATGTCCTGGTTGCCAGACCACTATTCTAATCTTTACCCATGATCTGTTTGTATCAGACAAACACAGCATCTGCTCCCCCCCAAAAAATATACTTCACAAGAGGCTCCCCCATCTTTACCTCCAACTAAGGAACGCTCCCACTCTTTCTTATGTTTTGCTCATTGCTGAGCTTTGGATACAAGATACATACTTATTTCCCTGACCTCCTTTGTCATTGTGGGTCCATGGAGGTTGTATTTTGTGAGCTGGTAGAGGTGGTATTTTGCAGAAAGAAAACAACAAAACTAAGTTGGCTGGGGAAGAACAGGAGGGAAGAGGATGGTGGCCTAAGTGTCACATCTCCAGATGAACAAGATGAAATTATTCTGTGAAAACACTGTAAACGTGAATGAGCCACACTGCCATTTCACGCAGTGACTACCCCCCAGAGACAGAGATTTCGGGGAACTGGTCTCTCAGGCAACCAAACCGTCTCTTGGTGAAGTGTTAAAACAGGATTCCTACCAACGGTTTGAAGAGGCACACATCTTTCAGGGGACTAGTGAAGGGTTAAAAGTTGGGAGGAGGAAAACATGTGGAACATTTTTAATGACCTCACATTCCTTTACACTGAGCAGTGGGACATGGTGTTTGAGTAAAGCCTGTTTATTTAGCCTGCAGAGTTTGAGCTGGAATGGGATTTTGTGTGTGAGAATTTTTGTGAGCCACACAAAGACATACAGGTTATAAGGTGTTATAATTAAAAGCATAAATATTGCTCCAAATCTCCCGTCCAAGCATAATTGGTCTGTTCTGTTCCATTCACCTAAGAGGAGATCCACTGGGGTGTGCGCATGTTGCAGAATCCTCGACTTAAATATTTGTGCCACCAACACCCAAACGGCTCAGAATGCCCCTAAAGTGACTGGAAACTACCCCCAAATGTCCCCACCCCTATCAACTGGAGTTATTGGTGCATACTCCAGTTGTGGCACTGAGAGACTAGGCTAGGCTAGAAGAGAGCCTAAACTTTTTCTTACATCAAAAAATAGAATATTAAGCCATGCTGGGTCTTTAAGTGTGTATCTTGACAAGTACACTTTTGCAATAAATCTCTGTAATCCCCTGCCACTACCTGCCTACCTAATGCCAATTTAGTCTGCTTACAGGAAAAATAATAATATGCATCTCCCCTCCTCCTATCAAGCCTCACATTCTTTCAGAACATTGGCAAAGGAAGGCCTAATGGGTAGCAGGTAAGTTTCAGTATGCAGCATAGGGACCTAGTATTTCATCCCATAGTTGAACCATGGATTCTTAATTCAGACCCCGCTTTAGAACTATTCTTGGATCTTTCTTTTAAATCGTATTTAATAGCTCCTGAGCGATACTCCAGCAAGATGTAGAGCTTCAAAAGAGCTCAGCCCAGCTGATGATTGATGTCAGAGAAACCGTCTGGTTTTGAGTTTTAAGGTGCACCTCGTATCCAAGTGCACACACAGATAAACACACAGGCCCAACAATGGAAGGTCTGTGCAGATGTCTCTGCCCCCATGGGTACCTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGAAGTGAATAGCTCTTCAAAGACCATAAAATATTCCTAAGGGCACATTTCCTACCTTTCCTGAAAATCTGACTTTCTCTTTTGCCATTTGATTTTCAGTTCTCCAACTCAGAGGGATTGCAACACCAGAGACACCTTCTTTTGAAAGATCTTTTCTTTCTCATCTTTCTCGTGCAGACACCACAAGATGACTTTTTTTCCTCTCTAGTGTTTATTCACATGGACCCATCTTTTCTATTCTACTGTGGCATTGAGAAACGCCCATCATTCCATGAATATGAATAATAATAGTAAACAATAGCTTCCTGTTGGGTCCATATCTGCTACTACACTTGCAGGGTTTTGTTTTTGGGGGTTTTGGGTTTTGGGGAGGTTTTTTTTTTTTTGTTTTCTTTTTCTTTTTTTGCCAATTAAAACCAGATTGATTTTCCTAATGACCTGTTTCGCTCACTTGTTAAAAGCCTTTTGTGGTGTCATATTGCCAAGTAGATAAAGTTTAAACACTTCTCATTAGTACCAGAGATCTCATAGTCCCTAGACTTACTGATCAAATATACTTTGCACACCTACCAGACAATCCCCTGAGTACAGTGAGCATGACATCTCTGCCATGTTTGAATCACTCTCAGCTTACAAAAATGTGTACAGGGAACTGTTGATTTCACCACAACAAGACTGATTAAACTGAATCTTTTACATATTTGAAAACTTTACAAAAAAAAAAATGAAACTTGTCTTTCCCTCCTCTGTCAAGAAATAAGATCTACCAGTTCTCCAGACTGGACTTTAGTCCCTGCTCACTCTGGGCAAGTAGTGAGGTCAGTCAGTTATCTGTCTTCCCAGTTTGGACTGTGGTTGGTGTGTTTACCCACAATGCTACAGAGATCTCGCCAGAGAACATCTTGCAAGGAATCAGAGTCCTTGCTCTCTCTCCCTTCTGTGGCTCAAACTCAGGCTCTGAGACTTGGCAGCAACGGTCTTTATCTACCATCTCGAAGGCTTGTCAACACACACTCTGGGTTGGTCTGCCTCTACAGATTCCCAAACTGCCCTGGAAATCCTAGAGGGCAGGCTGGAACAGCACCCCAGAGCCGCATGCCACCCAGCCCACTGTGAGCCTAGCCGCGGGCCAGGACTGGGAGTTATATTCACAGTGTCCCATGCTAATGTGTGAGAATGGTATATCAGACAAACTGGATGCCTTCCTTCCCATGGTATGAACTACATACCCAAGGGCTTCACAACAAGAATATAGAAGCCATCCCGTCCCCTTGGCCCATGAGGCCAATTGCCTCCTACGGACACTAACCCACCTGCAGCCCTGCCCCTTTGACCTCTTCCAGTGTTCTCAATTTTTAAAAAATTCCATTAAGAAATGAAACTGTGTTTTAGAACCTTCTCATCTGAGTAAAAGACTCTGAGCAACAAATCCAATAATTTTAACTGACAGGTATCCTGTCATCTTTCTGAAGTTTAAACAAATGCTCTTGAGTTGGCATTTTATCTGGATCTAAGGAATCCAGATAAGCTCTCTCAAATGACAGAGGAACTGAAAACTTCCAACAAGTTTATTTTCCTTGGTTTAAACTAATTATCATACTTGCTAGCTGCTCTAAACTATCAACGTTAAGCTAGTGGTACAGCTCAGTGGTGACATGTATGTATACTTATACAAAAGGCCCTGGATTACCAGTGGGAGGATAAGAGAACAAAGAGAAGAAAAGATGAAGGAACATCAATTGTCTTTTCTAGCCATTTACATGGCATGATATGTTTCCAGCAAATTGAATTAGCACTAGTTAGAAGATTGTAGGTTGATGTCACAGCTGTGTGATCTCTAAATTTGTTTCTGCATTGTGAGGTTTTAATTTTATCTCACCGCTGTGTGGTGAATTCAGATAACTTTTGAAGAAAATTGGGATATAGATTAGATTAGGTATAGATATAGATGTATGTATGTATGTATGTATGTATGTATGTATATGTATATATATCACTGATTTGTACGTTCATTTTCTCGCACTTAATATGAACATGTACTTGCACTTATTGATATCTGGATATCATTAACTGATATGTTCTCTGTAGCTTTATAAAGTGGCTGGCTGATGCTTAGATCTGATAAGCGTGGAGACTGGTCCTCACTCATTCTGTGTTGTGCATCCACTATTCTCGTCCTGCTACAAGATACTGTTATATATATATAACATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGATCAATATCTATATCCACTTATAGTTACTAATTCTGAATTTACCATACCTTTAAAACTTTAAATGGGTCATGTTTGATTACTTTGGTAACTATCTAACGAAAGGATTAGGAACGCAGAGGAACAGAAAACCTGAATTACAAAGCTTCCTTTGCATGGCCACCTTGTATTCAGCACACCGTCAAAAATTACCTCCTGGGGTCTTCCTGTTATATAAACCAAGTGGCCCCTAAGAATTTCATGAGGCGTCCCTGTAGCTGCCAAGCCATATGCTAAGGGTAGCAAAGTCTGAGCGTTCTTCGGTTATCTCTAACATTCTTTCTCTGAGAGACAAAAGGCAGAAGGGAAACTGTTCTCTGTACCAGAAAGGTGGCAAAAACCAAACAGTCCTGTGGTGCTTCCCTTTTCTCGGGGAGGACCCTTGTGAGCGATTTCCAGAGCCTGTGTTTTGCCCTCTCATCTGTTTTGTTTTGTTTTCTTTTCCTTACAG
Seq C2 exon
GTTAAAGACTTCATCAACTCTGAACTCCTAGCACAGCTCTACTCTTCTGAGGACCAGAACACTCTGATGGAAGAGTCCGCGGAGCAGGCTCAGCGCCGAGATGAGATGCTCCGAATGTACCAAGCCCTGAAAGAAGCTCTCGCAATCATTGGTGACATCAACACGGCCACGGTGTCCACCCCAGCCCCACCTCCAGTCGATGACTCCTGGCTCCAACACTCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040265:ENSMUST00000086074:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=NA C2=0.605
Domain overlap (PFAM):
C1:
PF0221213=GED=PU(41.3=69.1)
A:
NA
C2:
PF0221213=GED=PD(56.5=68.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types