GgaINT1011664 @ galGal4
Intron Retention
Gene
ENSGALG00000003164 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr8:4532228-4536950:-
Coord C1 exon
chr8:4536786-4536950
Coord A exon
chr8:4532455-4536785
Coord C2 exon
chr8:4532228-4532454
Length
4331 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
TGTTTTGTTCAATGAAATAGGTG
3' ss Score
6.01
Exon sequences
Seq C1 exon
ACGGAAAATGATGAGAATGGCCAAGCGGACAATTTTTCAATGGACCCCCAATTGGAGAGACAGGTGGAGACGATTCGAAATCTGGTGGACTCCTACATGTCTATTATCAACAAATGTATCCGAGACTTGATACCGAAAACAATCATGCACCTTATGATCAATAAC
Seq A exon
GTAAGTCACAGCCATGGTTTTAAACTATTTTAATGTCTGTCAAATCTGTTGCACGTGTACAAACATACCTCTTGAACAGAGCAGCAGCAACAGTGCAAAGTGAGGAGAAGAACACGATCCCATACATGTCACGCTCCAAAGCAAAACAGTCCATTCTTCTTTAGTAGCACGAGGGTCCCGCAGCCTTCTGAAGGTCTGGCACCGTGCTCTGAGTGCTAATTCCAGCGTGCTGAAGATTGGATTCACGTCATAATCAGAATATGTTATTATTTAAAGGTAAATCAAGGATCCTTTTTTTCCTGCCCTGTTATTGATATAGCAGGAAAAAGGGGGCTGGGAGCTCCATCTAGGCAGTCTGTGAAAGGAGTGGAGGAGTGCCTCCTTGTTTTCAGTCTGTAGTCCTTTGTCACAGTTTCCTAAAGCAGTTCTTATTTTATTTGGGTTTCTTTATATTTTCTAAATACCGTTTTCAAAGAATAAATCTAGAAGCCTTGGACACCGTTGCTTAGATAAGCAGATGTGGTTGTTTGATTTATCATGTGTGTCTTTCTTAGATCTGAAGATTGTTCGGTTAAAGAAATGGCTTTGAGATATCATTGTTTTTCCACTGTGCTAGAATCTCAGCCTTTCCTTTTTGGCAGAGTACTGAATGGACCTTGTTGAACTGAGCTGGCTATTAGAGCCATTGCTGCCATAGGAATTAATGTGGAGTGCACAGTTCCTGCTAGTTATGGGTAGTACCTTTGCCAATCAGTTGTTACAAATACGAGTGTGTTGTAACACAAATCTGGTAAGAAAGGGTTGTTTACTTTTGACTTGAAGTCACCTCTGTTTATACGCTGATGAATTTCATTAGCCCTATAGAATTTGTGTTTCACCTCAGAGGTAGGTGGCTGGACAGGAAACTTCAATGGCAGTTCCAGGGACATACAATATGAGTAGAATTTTTGCAGGAGGGCAAGAGACACTCCACTGAATTCTTGTAAGTTGAGGGAAGTCAGACTCCAAAGTATGTTCCAGTCATGGGTGAGTTTTTGCAGAAGAGCACAGGAACAATGGAGCTGCCTGTTTTTTTCCTCCACCTGAAATCAGACGTGGTTTAGAATTTATAAGGTGAGCGTATTCCCTCTGCTCTTTCCAGGTCACAGCTAGCAACTTGCTTCTTCCACTTAGCACAACTTCAGTGCCTTTTAAAAGGGCTGTTTTTCAGCTCTCATTTCATGAACTGCAGAGTTGGTGAGCAGCTCCTTTTGAAAGTTTACATTAAATTTTCTGCCACTCACCTCCTCATATGGAATAGTTTAAGGGTCTCTGAAGTGCCTGCTTTACTCTGAAGATTTTGTACTTGCAATCTCATCAACTGTTACATTGGTAGAAGTCTGCCATGCTGGCTGACAGTGGCTCATAGAAACAGCATACTTACCACATCATCCACCTTTCAGTTGACCTCATAGCCCATGGCTGTGTTGGGACTTGCTAGTGATCTGACAGCTATGCCTCAATCCTAGAATTTAAATTCATGGCAAAGAGTCAAAACTTTTTAAAAGACTGTAAAGAATGAGACTGAAAACTTTAATGCCCTTCTTTTCTTTGCAGCAGAGGCAGTAAATACCATATTAAATATAACAACTAAAATAGGATTTTTTTCAAAAACTAGAGCTATTAAAAAGAGAAAGAAATGCCTGTATTAAGATTGTGAAAGCAGGTCAAAAAGTTGTTCAAAGACCTGGAAAGTAGTGGAGCTGTGAGGGAAGGTGGGTCCCATTAAGTAGTGCATGTGTTCCTTGGAGTCTTCAGGAGTCCAACCTACTCAGTAAGAGTCAAGAGAAAATATCTCCCCTTCCTCTGGCTGATCATATTCTGTATTTTCTGTTGCCTTCAAAAGTCTGGAAACAGATTGATCCCAAGGAATTTGTTTCCATGACAATTGTTACCTCCCAAGTCCTCGTAGAACTTCCTTTCCACTTTGTGGGCCTGCAAATGAGCGCTTTTAATTCAGGGGAAGTATCAAATTCAAACTCAACGTACAGAAAATAATTAGATGCTGTCCCTAAGCATGCTTGGAGGCCTAAAGCTAGATTGTTGGATTCCAAATGCATCCCTTATTCTTCCCTTAGGGGTGGATGTTGATTACCTTAAAAGAAAATACATTTACCGCATGGAATTGCATTGAGTTACCATTAGAAATTCAAGCATGCACAAACAAAACACACATTTCAGAGTTCTCAGCATTAGTTCTTGATGCTTAGGTATGGCAGATTGTTCAGGAGGGGTGGTCGTGGAGCAGATAATGTATGCTCCGTAACCAGTGCTAATATTTGTCTCAGCTGAGTAGAAAAACTCAGAAGTACTTGTTACTACCAGCCTTAAGGAATTAATTGTCTGAGGCTTTTCTACTGCTTGCAGTCTGCCCACTGGTAAATCGGAGTTCTTTGTAAGCCCATCTTACCCCATTTTGGAGGGAAAGGGCAGGCTTTGCAGTGTGGGTGTTCTGGATGCTGGCTGTGATTCAGCTTTGACTGCAGGTCTGAAGTCTGTAAGGGAAAACATTTTAAAACATTGTGGTGAATGTTTCTGTTTTCTAAAAAGGCGAAGGCTCGTAAGTGTCACTTTCCCTTCCTTTCCCAAGCCAGAGAAAGTGGCTATTTAGGAAGAGCTACTAAGGGAAGGAGGTTGATTCAAGAACCATTCTTAGTACGGTAGTCTTCCCTTTCGGAAGAGTGCAGGGAGTTTCTTGAGTTTGTGCTAGTGGCAGGCAGGGATCTCATGATAAACATCACAGGACCTTTTTATTTTTTTCCAAAGAGATAGTTGTGGTTTAACAATGCTTTTACAATCAGCTCTGGCCTTAATCTAATTTTAGGACTTCTTTTATTTTTTTGAAGTGTTGCCATTAAAACGTTCATTTCATCAAGTAGAATGTGATGCTGTTTAACTGTGATATCTGTTTTTAATGTGGAGTCTTTGGCAATCACGAGGAAAGTAGTGTACTCTGGCTCTTGATCAGTACCATCTACTGGAAAACAGCATGAGACTCATGGAAAATTTTTGCAGGCTCTGCTAAGACTTTGAGCATCTCCTGTCATACATGAATGGGAAGTGACAGCCAAGCTCAGTCAGTATGGGTTTGTTTCCCTGTAAGATCTGTCCTGACCTTCTGCTCGCTGTCCCGCACAATTTGCACAGCTCGACTGCCCTTGCTGACCTTGTATGAATGCTAACATTGCCATAGGATTTATATCGTTGTAGCTGACTAGCACAAACCCATGTGCAAACGGAGCTCAGGTTTATGTAATCAGAATCTTGGGAATGTATTATTCGTAGTAGTATCTCCAGCACAAAAAAATCCTTAGAGAGCAAAAAACCGAAGGAGGAATAGATCAGAACAGCAACAAAAGGCTCAAATACAAGGATTTAGTAGATCAGCAGTTGGTCTATTTACCAAAGTCTTATTTAATCAGAACACCTCTAGCTTTTTATCTTTCTTAATGTGGCCCAGATTTCCATAACCGGGGCAGGCATAGCAGGAAATCAGTATATTGAATTAGATTACTTGGAGACTTCTTCCTTCAGCTTGAACATATGTGGATGGGATATTTAGAATCTGGCAAAGTTGCTGGAGAAGAAGGGCATCATCTGTAGCAAGGTACCACATTGCTAAGAAAATAGTTGACGAAGATGCTGTAAAGCCTTAGATTTCCCATTCTCAAGGGAATTTAGTATCTGGTGTTTTTGCTAATGGCTGCCATTTACCTCTGGGTAAGCCATTTAGAATTACAACAAAATACCAGCTAACTTCTGGGAGCCACTGGGAAGCCCTGGAAATGAATTGTAAACGTGTCACCTTAGAGACAAAGAACAGCATTAGCTCCAACCATGTCTGATGTCTCAAAGGCAGAAAAAGGTCTGCAGTCCACTGTGGAGGGACTGTACATAACTAACATCTTATTCTCAGATGTGAATAGTGATCTCAAAATGTAGCTTTGTAACTGCTTTAAACCCATCTATGTGCAGACAGCTGCTAAAATGTCCAGTCCATCCCTTTCCAGCTGCTCTGCCCAGCTGTATGCCAGCCTTTCCTTGGGTCTCAGCTCCCCCTCGGGCTGCTGCACCATCAGATCATTCTGACTTGAGCATTTTTGAGTCCCTCAATGGACCTAACAAAAAGCTGCACGACCAAGAATTGATGTAAATAAAGCAGCAGGAAAAAGAGATTCAATTTAGATAAGTCTGTCTCCTGGTTCTATGGATCACCCACTATATTTGTTCAATGCTCTATTTTCTATTTCTATTGTTGTTTATTTGTGCATTTGTTTTGTTCAATGAAATAG
Seq C2 exon
GTGAAAGAATTTATCAACGCTGAGCTCCTGGCTCACCTGTATTCTTCTGAGGACCAAAATACTCTAATGGAGGAATCAGCTGAGCAGGCACAGAGGCGAGATGAAATGCTCCGCATGTACCAAGCTCTAAAGGAAGCCCTAGCAATCATTGGTGATATCAGCACTAGCACTGTGTCAACCCCTGCACCACCTCCTGTAGACGATTCTTGGCTTCAGCAGGCCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164:ENSGALT00000005010:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=NA C2=0.633
Domain overlap (PFAM):
C1:
PF0221213=GED=PU(41.3=69.1)
A:
NA
C2:
PF0221213=GED=PD(56.5=68.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]