DreINT0059672 @ danRer10
Intron Retention
Gene
ENSDARG00000062083 | dph7
Description
diphthamide biosynthesis 7 [Source:ZFIN;Acc:ZDB-GENE-070410-57]
Coordinates
chr5:24573412-24576022:-
Coord C1 exon
chr5:24575850-24576022
Coord A exon
chr5:24574019-24575849
Coord C2 exon
chr5:24573412-24574018
Length
1831 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TCTACTTTATCTGTTTGTAGAAG
3' ss Score
6.78
Exon sequences
Seq C1 exon
CTATGATGAGAATGTGTTGCTGTGGGATGGGAGAAACATGAAGCAGCCCCTGAGTGAGACTGCTGTGGGTGGAGGAGTGTGGAGACTCAAGTGGCACCCCAGTCAAGAGCACCTGCTGCTTGCTGCATGCATGCATAATGACTTCCAGATTCTATACTGCCAGAAAGCTTTGG
Seq A exon
GTAAGAACTACTGCCACTGATCTTTCCATGTCAGTAAAAAATATCAGTAAGATTTTAAAATATCAGTAAAATTGACCATAAGGAGATTCATCATTGAAATAAGTTTTCAATTTCAGCATTCATTCATTTATTTTTTTTGCCTCAGTCCCTTTATTAGTCTGGGGTCGCCACAGCGAAATGAACCGCCAACTTATCCAGCATATGTTTTTTGCAGCGGATGTCCTCCAGCCGCAACCCATCACTGGGAAACAACCACACAAACTCATTCACAGACTTACACTATGGATAATTTAGCTTACCCAATTCACCTGTACCATGCACCTAAACCATGCATTCACCTAAAACATGCAAACTCCACACAGAAACGCCAACTGACCCAACAGAGGCTTGAACCAGCGACCTTCTTGCTGTGAGGCGAACATGTTACCCACTGCGCCACCGTGCTGCCGCAATTTAAGCATTTCAAATGAATTCTTTTTGTTATTTAAAGAACACTGGGGAAAAAATGGATCATACGTTCCACAATATTCAGGCACACAACACTGATGATGACATGAAGTGTTACATTGACATTAAAGCATCTTATCAGAATGATTTCTGATCATGTGACACTGAAGACTGGAGAAACAATTTACCTTTGCCATCATGTAAATAAATAACATATTAAAACAAAATGTAGCAATATTTGACACTAGTGATGTTTTCACAGTTTTTTTTTTTACTAATTAATTGAACCTCACACTATCAAGAGTATCAACATTATACACAACTGCAGCATCAAAAACAAGACTTTCTCCATCAGTCTCACTGGAAGTAGTAATGTAGCTTATCTGGCTTTTTGCCTACTGTTTTATAAGTATTATGAATTAGAACTTACTATATGACCAGCATACTATTTTATTTATTTATTTTTGCCAAATACTGTGTATGTTGTGTACGGAGTCCCATACATGAAATAAGCTGATAATCTGAATAAGTTGTGTTTGATTAAAGAGACATGGAAAATGTGCAGAGCTATTGGCCTCCAGAAATGTGGTTGAGAAACACTGATTTAGTTTATGAATAATGTTTTAGTTTAGGATTAAACCTTTCTTATCATCAGTATGTAGTAAATATACTGCAAGTTAAAATTTCGGTGATGAGGTCTAATAAATGTATGGAAAAAGTCTTAAAATAGGACTTAAAATGTAATGTATTTTATTATTGGATTCCTATATACCCTGTATTAGATTGTGGGCATGATTTATTCATTTGTTCCCTCATTTTAAGTTGTGCATAAGCTTTATTAAGTCGCTCCTTCAATTCACTGTCGTGCACAAAATTTACTTACTGTAAGTTCCCTTATTTGAAATAAATTGTTTGCTTGATTATAAAAATTCATGCCATTTATTCTAGATAAATCATAAAGACAAAATATTAATTAGTTGTACTCCATGTCCACTTGTTGGACTTCTTTTTATAGTATAGTTTAGCAATTACATTTCTGTTTTGTAAAGTAATTCGAGGACCAGGATTGAGAAATGCTGACATAGAAGAACATATACAGTATACTGAAAACAATGGAACCAAATTAGTAAATCATGTACGTGCTTTAGTTAAACAGAGGGATGCAATAAATAAATCACGCTCACATTTTATTATTTATTTTATTCAATGACATGTGTAAGGCTCTGTAATTATGCTGTTAGGCACATTTGGATGCAGGGATAAATTGGTACGAAATGTAGTGTGTTATATGGCCTCCTACAGTAGATTGAAATAGTGCTTGATTTTGAATTTAACTAATTTTTATAAGTTTAACTTCAACTTTTTCTACTTTATCTGTTTGTAG
Seq C2 exon
AAGGACAAGAGACACCATGTCCAGTTCTAGGGTCCTATATTCTTCACAACTCTTTAGCATATGGAGCAGACTGGTCCAGACTCCCTGTGAGCTCCTCTGCACCCCCCTCTCCTCAAGAACCTCCACAAACCAGCTCAGGGCTCGTCGAGTCCACAGGTCACCTCAGGATCCAGTATGAATCACCCACTGCCAGCTTCGACACATCTCTAGAGGATGACTCCGGTCGCTACATACCTGACCAGTGTCCTTCACCAGAAAAGAGCTCAGTTTCAGACCTGTTCACCAGCGATGCCCGGGACTCTGTGTCCTGTCTGATAGCCACCTGCTCCTTCTACGACCACATGATGCATGTGTGGCGGTGGGATTGGAGCCCAGAGGAAAAACACGAAAGCCTATAAAAATGAGCTTGTTTGGAGCTGCACATTCAGGTGACTGAAGCATTGCTTTGTATTTAATGTATGCAATATTGCTTTATTCCTGTCATTTGCTGACTATATATTCTTGGCCAGAATATTTACAGGCCATTTTTTTCTAGTGGTTATGGCTCCAATTTAATTGACACTGAGATCTAGATCTTTTATAACAAATAAACTATATCTATATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062083:ENSDART00000089339:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.295
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(22.5=15.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGAGTGTGGAGACTCA
R:
TCAGGTATGTAGCGACCGGAG
Band lengths:
343-2174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]