RnoINT0050771 @ rn6
Intron Retention
Gene
ENSRNOG00000008102 | Dph7
Description
diphthamide biosynthesis 7 [Source:RGD Symbol;Acc:1304868]
Coordinates
chr3:2176974-2178956:+
Coord C1 exon
chr3:2176974-2177146
Coord A exon
chr3:2177147-2178513
Coord C2 exon
chr3:2178514-2178956
Length
1367 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TCTTCTGTTTCTCACTACAGAGG
3' ss Score
8.87
Exon sequences
Seq C1 exon
CTATGATGAGCATGTTCTGCTGTGGGACACTCGGAATGTAAGACAACCGTTGGCAGATGTGCCAGTGCAAGGAGGCGTGTGGCGGCTCAGGTGGCACCCGGTCCACCACCATCTACTCCTGGCGGCCTGCATGCACAACGGCTTCAAGATCCTCAACTGCCAGAAGGCCATCG
Seq A exon
GTGAGTGGGAACATGAAGCTGACTTCAGGGTAGGGCGTCAGGTGATGTTCTCCTTAAGCCACACTCAGAACTTATACCTGCCTTGTATCTACATTGACATCAGGTTCAAGAACAAACTTTCATCCTGGCTTCTCATGCCCAGCCTTCCTGGGTTGTGCAGTTCCCTAGCCCCTGGGACCCTGTCTGGAAGCCCTAACTCCTTTCTCTCTTCATTCAGATCAGTTGTGTTTCTTGTTCCTCTCCCTCTACTCCCCTCTGAAAAGAAGCAGTCTGAAGACTACCTCAGATTCCCATCATTAAATTGCTGGTCATTACTCCTTGTATCTCTTTAGTTGTCTAACTCTTTTTAAAAAAGATTTATTTTTACTTTGTGTGTGTATTGTATACAGGGTCTCATGTAACCCAAGCTGGCTTCAAATTTGATATGAACTCCATGACAATCTGTGTCTCAGTGTTTTGGGTCCTGGGATTACAAAAGCAAGCATGTCCGGTATCCCTGCTCCCCTGGGTCACCTTCAGCCGTGCTCCTGACTTGAGCCTGCTGTTCAGTCGCGGTTCCTTCCTCCTTCCATGACATCTCCTCCATGCTCTTGTGGCTCTGGCTGCTGCAATGTTTCCACTGCACACTATTTTATTTATTTATTTCTGACACTTTCCTCATCTGCCAAGCTTTCCAGGGAAGTTACCAGAAAGAAACTGCTTCTGAGACCCACTCAGGCTGCGAGACCCTAGCCATTGTCCATTGCACTGAGCTCCTCACTGCTTCTCTTTGAGATACTTATGAGTATCTGTTAGTGGAAGCAGAGGGTCCTTCAGTTCCACTCTGCTGTGAGCTCTCGCAGGGCCTTCCCCGTGGTGATCCACTGTGTGCTCCTGAGAAGGGGCTGGCAGAATGTGCATGGGCACTGTACACATGCCTGGATGCCTGCTGCCTGAGGAAACCAGGAGAGGGTATATGAACCTCTGAACTGGAGTTCCTGGCAGCTGTTGCCTGCCATGTGAGGTCTTCTGCAAGAGCAGCCATCTTTCTTACCCTGTTTCCTCATCCCCCCTCCCCCATTTGTTGTTTTTCCTCTTCCTATCTTACTTCCAGAAAGCTTTTGCCAAATCCTCCAGTTTGGAAGCATTGCCCCATCTGTGAGTCTTGTCTAGCCCTGGCTGATCTCAGAGACATAGTGCACATTGCAAAATTCGTGTTTTTTTTTTCCTACCCACCTTTCCACAGCTTCATTCTTATACAGAATTGACAGCTACTCAAGAAATGTGGACTAACCGAATGGCTGCCACTGGTGGAAGTTGATGGGCCACAAATGGAGGCTGATTAGCTTTGAGTAATGCTGTTTTTCCTCTTCTGTTTCTCACTACAG
Seq C2 exon
AGGAGAAGCAGGACATAACTGTTCTAACCTCCCACACGATGCCTAACTCATTAGTGTATGGGGCTGACTGGTCCTGGCTTCTTTTCCACTCCGTGAAGTCCACACCTGCCTGGTCCTTGGATCAAAATGACGTGGGAGTCAAAGCAGCAGACCACGATAGCCTGAAGGCTGCACAGCAGCTGCCAGCCCCTTCTCAGGAGCACACAGTGGATCACCACGGGGAAGGCCCTGCGAGAGCTCACAGCAGAGCGGAACTGAAGGATCCTCTGCTTCCACTAACAGAGGACAGGAAGAGCAACAGCAAAGGATCCTGCTCACCCTCAGTCAAGAGGAGTGGTCTTAGCCGCCGCCCTAGTGGACACAACTTTGACAGCAGCCTCCTGGCCACCTGCTCCTTTTATGACCATGTTCTCCACCTTTGGAAGTTGGAGACAAAGCAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008102:ENSRNOT00000046898:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.480
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(22.5=15.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAACCGTTGGCAGATGTG
R:
TCCACTGTGTGCTCCTGAGAA
Band lengths:
344-1711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]