MmuINT0175814 @ mm10
Intron Retention
Gene
ENSMUSG00000026975 | Dph7
Description
diphthamine biosynethesis 7 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24969506-24972163:+
Coord C1 exon
chr2:24969506-24969678
Coord A exon
chr2:24969679-24971522
Coord C2 exon
chr2:24971523-24972163
Length
1844 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TCTTCTGTCTCTTACTACAGAGG
3' ss Score
8.64
Exon sequences
Seq C1 exon
CTATGATGAGCATGTTCTGCTGTGGGACACTCGAAACATAAGACAGCCATTGGCGGATGTACCAGTGCAAGGAGGTGTGTGGAGGCTCAAGTGGCACCCAGTTCACCACCATCTACTCCTGGCGGCCTGCATGCACAATGGCTTCAAGATTCTCAACTGCCAGAAGGCCATTG
Seq A exon
GTAAGTGGGGACATAAAGCTGACTAAAGGGTAGGGACTCAGGTGATTTTTCTCCATGGGCTATATTCAGAACTTATACCTGCCTTGTACCTCAGGTTCAAGAACCCACTTTCATCCTGGCTTCCCATGCCCAGCCTTCTGTATTGTGCAGCTCCCTAACCCCTTCCTGTCTGTCGGGAAGCATTACCACGTGTCAATGGCCACCCTTGCCCTGCCTTCTCTGATGTTTCTGCTTTTGAACAGCGTGGACTCTGGTCACCCCATGATGCACATGCATTGTCTTCCCCCTGGCTCCCTTTCTCCCAGAGCCTGGTGTTAGTTAAGTCCAACTCTACCTATGGCTCTGGGTAGGGAGCGTCACTTGCAGGGCGAGCCGTAGGGAGCTCTTGGATGTGCTTGGGGAACCACAATATGAGCTCACATTATCAGAACTGTTTCTCCCCTCCATTTCTCTTTCCATGCCCTAACTTCTTTCTTCCTCATCCAGAGCACAGTTTTGCTTCTTGCCCCTCTCCCTCTGAAAAGACGCAATCTGAAGACTACTTCAGATTCCCATCGTTACATTGCTGGTCTTTAAGCCATTATTACTCCTTGTATCTCTTTAGTTGTCATTCTCTTTTTAAAAAAGATTTGTTTTTAACGTGTGTGTGTATTGCATACAGGGTCTCATGTAACCAAGCTGGCTTCAGATTTGATATGTATTTGAAGCAGGCCTTGAACTCAATGGCAATGCCCCTGTCTCGGCATCTTGGATACTGGGATTACAGAAACAAGCATATGTGGGATCCCTGCTGGGTTTTGAGGATCATTTTCACCATGATCACCCACCATGCTCCTGACTGAGCCTGCCCTGGCTTAGTCATCTGTCCTTCCTCTTTCTGCAACGTCTCTTCCATGCTGTTGTGGCGCTGTGCTGCTGCTGCTGCTTAGTGGCTTATTTCTGACGCTCTCCTCATCTGCCAAACTATCCAGGGAAGTTACCAGAAAGAAACTGCTTCTGCAGACCTACTCAGGCTGCAACTTTCTAGCCATTGTCCTACAGCCAAAGGCAGCTGCTCACACTTGCTGGAGTCTTCTTGGCCTCTGTGCTGCACTGAGCCCCACATTGGGATATTCTCCCCCCTCTCGCATTCTTAAAGATATATCTATACCTATATAGAGAGAGACAACACTGTAGCTGCCTTCAGACACACCAGAGGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATATGGTTGCTGGGAATTTAACTCAGGATCTCTGGAAGAGTCAGTGCTCTTAACCGCTGAGCCATCTTTCCAGCCCCCCATTGGTTCTTTTTTAAGATACTTGTTTTATGTAAGTGTGTGCATGGGCACTATATGCATGCATGGTGACTGAGGCAACCAGAAGAGGGCATACAAACCTCTGAACTGGAGTTCCTGGGAGTGCCATGTGAGTCCTCTAAACTGAACCCATGTCTTCTGCAAGAGTTGCAATTGCTCTTTACTGTTGCCATCTCTCTTTCCTCTCATTTGCTGTTTTCCTCTTTCCATCTTACTCCTGTGTTCTTTGAGAATGAATTTTGTCAAATCCTCCAGTTTGGAAGCATGTCCCCTGTTTGTGGGTCTCGTCTAGCCCTGGCTGATCTCAGAGACACAGTGCACATTGCAAAATGCATATTTGTTTTATTTCTGTACCCACCTGTCTACATTTTCATTCTTACACAGATTTTCCAGCTATTCAGTAAATGTGTACTACCTGAATGGCTGCTATTGGTGGAAGTTGATGGGAGTTATAAATGGAAGCTGATTAGCTTTGAGTAATGTTGTTTTTCCTCTTCTGTCTCTTACTACAG
Seq C2 exon
AGGAGAAGCAGGACATAACTGTTTTAACATCCCACGAAATGCCTAACTCATTAGTATATGGGGCTGACTGGTCCTGGCTTTTCCATTCCATGAAGCCCACTCCTACCTGGTTCTTTGATCAGAATGACATGGGAGTCAAAGCAGCAGACCACTCTAGCCTAAAGGTCACAGAGGAGCCACCAATACATTCTCAGGAACAAACCATGGATCGCCAAGTGGAAGGCCCCGCTAACGCTCATACCAGAGCTGAACTGAAGGCTTCTCTCCTTCCATTAACAGAGGACATGAAAAACAGCAAAGACTGCTCCTCATCCTCAGTCAAGACTCGTGATCTTAGCCACTGCTCTGGTGGGCAGAGCTTTGACAATAGCCTCCTGGCCACCTGCTCCTTTTATGACCATGTTCTCCACCTTTGGAAGTGGGAGACGAATCAAGCTCGCACTCTTTGCAGTGGCACTGGATGTGATTTGGGGAGTGCTGACCATTGAGAATGGACTCTTGTGTTACTGTTTTGGCAGTGAATTTCCAGCTCTACAACTAAGTGTTCTGGGTATATTTTGACTTTCAGCTCTTCATTTGTATTAAGTCCCTGCTTACATTAAATAACTTTTTTTTTTTTTTTTAATTTTAGAAATCTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975:ENSMUST00000028351:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.235
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(22.5=15.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGGCGGATGTACCAGTG
R:
CCACTTGGCGATCCATGGTTT
Band lengths:
346-2190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types