HsaINT0182691 @ hg19
Intron Retention
Gene
ENSG00000148399 | WDR85
Description
WD repeat domain 85 [Source:HGNC Symbol;Acc:25199]
Coordinates
chr9:140449361-140459058:-
Coord C1 exon
chr9:140458886-140459058
Coord A exon
chr9:140450101-140458885
Coord C2 exon
chr9:140449361-140450100
Length
8785 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TCTCCCATCTCTCACTCCAGAGG
3' ss Score
8.65
Exon sequences
Seq C1 exon
CTATGATGAACACATCCTACTGTGGGACACACGAAACATGAAGCAGCCGTTGGCAGATACGCCTGTGCAGGGTGGGGTATGGAGAATCAAGTGGCACCCTTTCCACCACCACCTGCTCCTGGCCGCCTGCATGCACAGTGGCTTTAAGATCCTCAACTGCCAAAAGGCAATGG
Seq A exon
GTGAGTGGGGACCCGTGGCTGCTGGGCCTCAGGGCAGGGCACCAGTTCCCTGCCCCCTCGCTCTGCTGGGCTCTTCCCTCAGCTCCCTGCTCCCTTGCTCTGCTGGGCTCTTCCCTCAGCTTTTACACACTCCCAGCGTCGCGCCCTAGACTTGGTCGTGATCCATAACTGTCCCAGCTCCAGAATCTCTGCTCTCTAACCACAGTTTTCCCTGGTTTCCCAGCTCCGTCATTCCGGTGCCTCCTGCATTTCGGCAGACCTCTGACCCCACTGGGACCTCTAGTCTGGAGGCTTGGCCACCCATCACTCCCATAACCATCCTTGTCTGTGCTCTCCCATGCTCTTCCTGCCTGTGGTCAGCTGGGACTCTGTGGTCTGCTGCCCCCTGTGAGCTCACACTCCATTCCCTTCATCCCTTTCTCACACTCTGGGCAGAACCCAGTGTTGTTTTGTTGGGAACAAGCACCTCTGATTCTGGTTGAGCCGGAGAACGTGGCTGGAATCAGCTGTCCACGTTGTGTTCTAGTAGGTCCCTGGGATTCCTGGTGATCTGTAACATTTCTCTAGGCAGTAATCCCCCACTGTCAGAACTGGTTCACATTTTCTTCTCTCTGCTCAAACCTCCAGGACCTCCTCTTCCCTCCTGACTTGCAGCTCATGATCTCTCCTCTTTCGCCTCTTCTCTCTCCCCTCACTCCAAAAATAAGCAATCACAAAACCACCTCATCTTCCCACCATTAAGCCCACCAGCCTCTCGGGCCACCCACATGCTCTCTGCCCTCTGCAGCGGTGGGTGACCCACACCTGTTCCCAAGGCCAGTTTCTTCTCTGCACTGGATTGTACTCAAGGACTTGATTGACTCGATTTCCGCATGGTATTCCTCTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACCACAGCCTTCGCCTCCTGGGTTCTAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCCACCACCATGCCTGGCTGATTTTTATAGTTTTAGAAGAGATGGGGGGTTCACCATGTTGGTCAGGCTGGTCTGGAACTCCTGACCTCGTGATCCGCCTGCCTTGGCCTCCCGAAGTGTTAGGATTACAGGCGTGAGCCACCGTGCCTGGCCTGTATTCCTCTGTGTTTTGCATCTTTAGTTTCTCCATCTCTTCTGTATTGTTTCTGTTAGTTCTGTGAATGTGCTTTGTATTTCTCATCGTTTTTTGTTTTGTTTTGAGATGGTGTCTTGCTCTGTCACCCAGGCTGGAGTGTGGTGGTGCAATTGTAGCTCACTGCAGCCTCAACCTCCTGGGGCTCAAACCATCCTCCCATCTCAGCCTCCTGAGTAGCTGGGACCCCCATGCCAAGCCATAATATTTCTTGTATTAAAACAATTTGAGATCTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGAATGGTGTACAGTGGTGTGATCTCGTCTCACTGCAACCTCTGCTTCCTGGCTTCAAGCAATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATCACAGGCTTGTGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCACGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCCACCTTGGCCTCCCAAAGTACAGGCATGAGCCACCGTGCCCAGCCCCTGGGCTCAAACCATCCTTCCACCTCAGCCTCCCGAGTAGCTGGGACCACCATGCCCAGCCATAATATTTCTCATCTTAAAACAATTTGAGGTCTTTTTTCTTTATTAATGGTGATACATTTTCCTCTGAGCACTGCTTTTGCTGCAACCCATACATTTTGGTATGTTGTATTTTTATTTTCATTCATCTCAAGGTACTTTCTAATTTCCCATGTGGTTTTTTTCTTCGACCATTGGTTATTTATGAGTGTGTTGTTTAATGTACATGTTTTTAAGTGCCCACATTTCTTTCTGTTACCGATTTCTAATGTTATTCCATTGTGCATTCCTGTTGAATTTACTGAGATTAGTTTTGTGGCCTAGAGTGTGGTCTCTGCTGGGGAGTGCCCCTGTGCACTTGCGGACGTGTGTTCTGCTGCTGTTGGCTGGAGTGCCCTGTAGGTGCCTGTGAGGTCTCGGCTTTATAATGTTCAGATCTTCTGGTTCCTTACTGAATCTCCTGTCTGGGCAATATTGAAAGTGGTCTGTTGGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGTACTTTGGGAGGCTGAGGTGGGCAGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCTGTGGTGGGTGCCTGCAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGAGACACAGCGAGACTCCATCTCAAAAAAATAAAAGAAAGTGGGCTATTGCTACCTCCAACTCTAACTGTAGAATTATGTATTTCCAGCCTCGTTTCCATCAGTTTTTACTTCACGTATTTTGGGGATCTCTTTTATATATGTTTATAATTCTGGTATCTTCCAGATGTGCTGACCCTTTTATCAATATAAAGTGTCTGTCTTTAAATCTAGTAACATTTTTTGTTTTAAAGTCAGTTTTGTCTGGCATTGGTAAAGTCACTTCAGTGTGGCGTGATGCATCGTTTTCATTCTCTTTCAGTTCACACCTGAGTCTGAGGCGAGTCTTTGGTATGGGGTCATGCTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAATGCAGTGGCGCTATCTTGGCTCACTGCAACCTCCACCTTCCGGGTTCACGCCGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGAATACAGGCACCTGCCACCACGCCTGGCTAATTTTTGTATTTTTATTGGAGACGAGGTTTCACCATGTTGGCCGGGGTCGTGCATTTTTGCCAGGAAACCTGTGAAAGTGGCGCTGTGCCCTCCTTAGTTCCTCACATCAAGGGCCTATGATGCCACATTGTTCCATTTTTGTGAAATTTGGTCACTTTGTTAAGGTGGTGTTTGCCCCAATCCCTTCACTGAAGAGATACTATTTTCCTCTTTGGGATTAATCAGTAATCTGTGGTGAGAATCTTTGAACCTGTGTCAATAACTCCCTTTTCAGACTTTTACCCAATTCAGAGACAATTGGTGCTTGAATAAATTATGGTAATGGCAAAATGGTGATTTTCTTTTTTTCTTTTTTTTTTTTTTTTTTTTGAGATGGGGTCTTGCTCTGTTGCCCTGGCTGGAGTGCAGTGGCACGATCTCGGCCCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCCACCACCACGCCCGGCAAATTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTGTGTCACCCAGGCTGGAGTGCAGTGGTGGGATCTTGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGACTACAGGCGCCCACCACCACACCTGGCTAATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCCTGCCTGGCCAATTTTTTGTATTTTTATTAGAGACAGGGTTTCGCCGTGTTAGCCAGGATGGTCTTGATCTCCTGACTTTGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCCACCACGCCTGGCCATCTCTTCCCATTCTTAATGGCATTTTTTCCTACTCAGAACACAGCATTAACATATTATTTTTCTGTCCTTGCCCCACCTGTTTTTTCCTAAGTCTCAGCTCGCAATTGACTATTTGTTGTGCTCCCATCCATCCTGGTGACAGCTGTTCCCAGCCACCGCCTGTTTGGATAGAGCTTGCCTCCTGAGAGACGCTTAGGAGAGGCCCTCGGTGGTGTTTCCTAGACTTCTGAATACTTGATACTTTTCTCTGTAGCCTTGATAATTGAAGGAGAACTTGCCCATTAATCCCTTGACTTGCATTTCCTTTGCTTGAGTTTCTTAAACACACTCCAGCATTGTCTGTTGGGCACACACTGGGTCTCCTGCCTTTTAACTGCTTTTGTAAAAATTGTGATAAAATTTATGTAACATAAAATGCATGATTTTAGCCACTTTAAGTGTGCAATTTAGTGCAGGGACCAGCCCCACAGGGTCAGTGGGCTTCTCCCTGTGTGCGGCGACGAGAGAGTGTAGAAATAAAGACACAAGACAGAGATAAAAGAAAAGACAGCTGGGCCCGGGGGACCACTACCACCAATGTGCAGAGACCGGTAGTGGCCCCGAATGTTTGGCTGCACTGTTATTTATTGGATACAAAGCAAAAGGGGCAGGGTAAAGAGTGTGAGTCATCTCCAATGATAGGTAAGGTCACGTGGGTCACGTGTCCACTGGACAGGGGGCCCTTCCCTGCTTGGCAGCCGAGGCAGAGAGGGAGAGGAGAGAGAGAGAAAGACAGCTTACGCTATTATTTCTGCATACCAGAGACTTTTAGTACTTTCACTAATTGACTACTGCTATCTAGAAGGCAGAGCCAGGTGTACAGGATGGAACATGAAGGCGGACAAGGAGCGTGACCACTGAAGCACAGCATCACGGGGAGACGGTTAGGCCTCCGGATAACTGCGGGCAGGTCTGACTGATGTCAGGCCCTCCACAAGAGGTGGAGGAGCAGAGTTTTCTCTAAACTCCCCCGGGGAAAGGGAGACTCCCTTTCCAGGTCTGCTAAGTAGCGGGTGTTTTTCCTTCACATTTTTCGCTACCGCTAGACCATGGTCCGCCTGGCAACGGGCGTCTTCCCAGATGCTGGCGTCACCGCTAGACCAAGGAGCCCTCTGGTGGCCCTGTCCAGGCATAACAGAAGGCTCGCACTCTTGTCTTCTGGTCACACCTCACTATGTCCCCTCAGCTCCTATCTCTGTATGGCCTGGTTTTTCCTAGGTTATGATTGTAGAGCGAGGATTATTATAATATTGGGATAAAGAGTAATTACTACCAACTAATGATTAATGATATTCATATATAATCATTATCTAAGATCTATATCTGGTATAACTATTCTTGTTTTATATTTTATTTTACTGGAACAGCTCATGTCCTCGGTCTCTTGCCTCGGTGCCTGGGTGGCTTGCCGCCCACAATTTAGTGGTATTAAAGACATTCAAGGCCGGGCGCAGTGTCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACCTGAGGTCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGTCAGGAGAATCGGTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCACGCCACTGCGCTCCAGCCTGGCGACAGTGACACTCCGTCTCAAAAAAAATAAAAAATAAAAGAAGACATTCAAAATACTGTGCAATCATCACTGCTACTTATTTTCAAAACTTTTCTATCACCCCAAACATCCCTCCCCCAGCCTCTATAACCTCCGTTTACTCTGTCTATGGGGATTTGCCTTTTCTAGATATTTCATGGAAGTAGAATCGTGTGTCTTTTTATATCCGGCTTCTTTACATAGCTTAACGTTTTCAAGGTTCACCCCTGTTGGAGCATGTGTCAGAATTCTCTTTTTAAGAAGGTAATGATGGACCACATTCTGTCTGTTCATCCTCTGATGGACATTTGGGTTGTTTTCACCTTTTGGCTATGGTGAGTTTTTAGTTTTTTTTTTAAAGAGAGGGTCTTGTGTCCTGTCACCCAGGTGGGAGCGCAGTGGTGGAGTCAGAGCTCACTGCAGCCCGGACCACCTGGACACAAGCAGTCCTCCTGCCTCAACTCAGTCCTCAGTGTCGGGATTACAGGCTTGAGCCACTGCATCCAGCCTTCAGTTCTTAAAGTTGAAGAGGTGAACTAAGACAGGTCTGAGAGTTCAACATTCCAGGCCAGTTTTGTCAGGTACTCTGTATAGGCCTTTTTTTCTTTTTCTTTCTTTTTTGAGACGGAGTCTTGCTCTGTCTCCCAGGCTGGAATACAATGGCACAATCTCAGCTCACTGCAACTCCCACCTTCCGGGTTCAAGCAACTCTCCTGCTGCAGCCTCCGGAGTAGCTGGGATTACAGGTGTGTGCCACCACGCCTGGCTAATTTTTGTATTTTTTAGTAGAGACGAGGTTTTACCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCAACCCGCCTCGGCCTCCCAAAGTGTTAGGATTACAGGCGTGAGCCGCTGTGCTCGGCTGGCCTTTTTCATAACTTTATTTATGTATTTTTTTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGGGTGATCTCAGCTTACTGCAACCTCCACCTCACAGGTTCAGGGGATTCTCCTGCCTCAGGCTCCTGTGTAGCTGGGACTACAGGCATGCGCCATCATGCCTGGCTAATTTTTGTGCTTTTAGTAGAGATGGGGTTTCACCATGTTTCCCAGGCTGCTCTCAAACTCCTGCCCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGAATTACAGGCGTGAGCCACTGCACCCAGCCTGTATCTTTAATTTAAACAATTTTTTTTTTTTGAGACAGAGTCTTGCTCTTTCACCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCATGCAACCTCCACCTCCCACGTTCAAGCAATTATGCTGCCTCAGCCTCCCGAGTAGCTGGTACTACAGGTGCATGCCACCACACCCAGCTAGTTTTTGTATTTTTAATAGACACGGGGTTTCACCATGTTGACCAGGATGGTCTCGATCTCTTGACCTTGTGATCCACCCGCCTTGGCTTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCGCCCGGCCTAATTTTAAAACAATTTGTATTGTCTGGGTGCGGTGGCTGACACTCGCAGTCACAGCACTCTGGGAAGGGTGGGCGGATTGCTTGAGCCGGGAGTTCAAGACTAGCCTGGACAACATAGTGAGACTCCGTGGCCACAAAAAATAGAAAAAACTAGGGGGCATGATGGTCGCAGCTACTCAGGAGGTGAGGCAGGAAGACAGAGCCCAGGTCAGTGCACTCCAGCCTATGCGACAGAGTGAGGTCCTGTCTTGAAAATAAAAAGAGGGAGGAAACGTTGGCCTGTGGCTAATCAGAAAGGGCCTCCCATTCTTGGGGTCGCAACAGTGTCTTCCGTCCACTCATTCGCTGTCTTTTTCCCAGGCTGTGGCTCTCTGAGGGCTTAGACTCTGCCTTATTACCTTTTCCTAAGCTGTAGAAGAGGTCCTGCTGGCCCGAGTGGACGTGTTGAGCGATTGCTGGATGAAAGACTAGCGGAGGTCCTGCCTGCCCTGTGACGCTACCTCCCAAGGGACAGTAACGGCCTCCCCAGGGGCTTCCTCCCGAGGGTCGCCCCACACATGCTGCTCGAGGGCCCCTGTGGCTGTCTCTGAACATTCAGCATCTCACTCCTCCTCGGAGCCACCTCTGCCCAGTTGAAGCCCTGGGCCCAGGGTTGGGCCTCCCCGGCCCAGGCCCATACAACCTCGGCACGTTTTGTAATCCAGTGCGGTCCTGTTCTGCCCTCAGCCCTTCTTCCATCAGCACTCATTCTGGTTCTGATTCCGGTCACTGCTGGCATCAATCCCTGTACTTCAGAGGTAGCGATGGCAGCCCTTTCAGAGCCCAAGTGGCCACCCAGCCTTGCAGCCCCTGGCTCACCTTCCACTTGCTCTCTGCAACTGCCCCTGCCAGCCCTGGCCTTGCCTCCTGGACTCCAGATCGCCTCGGGTTTGGCCACGCCTCGTCATTCCCTCTGTTGCTGTGTGCTCTGGGAGGCAGTTGTGGCCTCTTTCCAGTTGCCGTAGCAACTTCTATAAAGAAACTGCTCACTTAACCTTGTCAGTGGCTCCTTTCCAAGCCAGAATCCAGACTCTGAAACAGGGCGTGCCGGACCCTGCATGCTTGGGACGCTCCAGCCCACTGTCACTCACTGACAGTGCCATGGCTGCCTGTTTGTGGTTCCCCGTGCGAGCCTTGGACTTTCTCACCTCTGCTGTACACATGCTGCCTGTTCCTCAGACATCCCCTTCCTTCCCAGCTGGCTAAAACTCCTTTGTTCTTTGGTTTTAAGTGTTAACTGAGGTCTTTCCCCCTCTCTGGCTTTTGCCGTATTCTTCACCATCAAGTGAGGTTCTGTAGCCCCGCTTGATGCTTCTCTTGGAGGCACACAGGCGTGTGCACTGCAAGATGACGGTCTGTTTCTTCTCCAACATATGCCCAGGTCTTGCTGGTTCCTTTGCATGACACAACGGCTCCTCAGGAAACACTTGCTGACCTGTGAGGGGCTGTTCTTGGAGTCTCCCTGTCAGGTGTGACAGGTTGGGGAGAGGCTCTGGGTGATGTTGTGTTTCCTGGGTTCTCCCATCTCTCACTCCAG
Seq C2 exon
AGGAGAGGCAGGAGGCGACGGTCCTGACATCTCACACATTGCCCGACTCGCTGGTGTATGGAGCCGACTGGTCCTGGCTGCTCTTCCGTTCTCTGCAGCGGGCCCCCTCGTGGTCCTTTCCTAGCAACCTAGGAACCAAGACGGCAGACCTGAAGGGTGCAAGCGAGTTGCCAACACCCTGTCATGAATGCAGAGAGGATAACGATGGGGAGGGCCATGCCAGACCCCAGAGTGGAATGAAGCCACTCACAGAGGGCATGAGGAAGAATGGCACCTGGCTGCAGGCTACAGCAGCCACCACACGTGACTGTGGCGTGAACCCAGAAGAAGCAGACTCAGCCTTCAGCCTCCTGGCCACCTGCTCCTTCTATGACCATGCGCTCCACCTCTGGGAGTGGGAGGGGAACTGAGCTTGAAATCATGAAGCCCCTTCCCACAAGGAAACCAGGAGGGAGACTGCGAGTGAGTGCCCGGGACCACCTCATCAGAGATGCTTACTGCAGCCCTGCAGGTGCCTGTGCACTGATGGAATCCACAGTGTAGTCAGAAAAGCTGTTGACTTCTCTTAAATCAGCTTCCCTGCTGGGCCCCTGAAAGTGGACTGGGTGATTCTGTCTGGCAGAGAGTGGGGAAAAGACGCGGTTTCCAGCTTGCAGATTTGTTAAGTTTCTCAGGCAGATTTTGACTTTCAGCCTTTCATACTTGTTTAAGCAACTATTTGTATTAAATGAAGTTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148399-WDR85:NM_138778:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.368
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(22.5=15.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)