GgaINT0124222 @ galGal3
Intron Retention
Gene
ENSGALG00000008750 | WDR85
Description
NA
Coordinates
chr17:1977918-1979751:+
Coord C1 exon
chr17:1977918-1978090
Coord A exon
chr17:1978091-1979653
Coord C2 exon
chr17:1979654-1979751
Length
1563 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TATCTATTTGTTTTTTAAAGCTG
3' ss Score
8.26
Exon sequences
Seq C1 exon
CTATGATGAGCATGTGCTGCTGTGGGACACCAGGAACATGAAGCAGCCGCTGGCAGACACCCATGTTGAAGGTGGAGTCTGGAGGTTGAAGTGGCACCCAACCTGTGATTTTGTGCTGTTAGCAGCCTGCATGCAGAGTGGATTCAAGATCCTTGACTGCCGTGGAAGCATGG
Seq A exon
GTGAGTGTTCAGTGGAACAGAGTTGCTCCTACGCTGCTCTGCTGTTCTCATTTCCTACCTCCAGGTTAATGGGGAAGCTCCAGCTCTGAGCTTGCTAGAAAGATTCAGATATTGTTTATAGCCTTGGACATTTATTTCAACTTAAATTAACTCTTCCAGCTTTCCCAGACCTACTCTCAGCATTGGCATGGTAGCTTGTGCCATGTCGTTGTCATTATTCATATGTAAATCTCTTGTAACTTCTCTTAATGGCGTGAAGCCTGTTTGTCTTGGTATAAAAGCATTACGTATGTTCTGGTTTGTATTCATCTTGATGGTTCAGAGAGGTTCTGAATATCAGGTGATGGTTTACTGTCAGCAGGAGTAACTAACCTGCTGGTGACACAGACATGGAGTGGCTGAGGTTGGAAGGCACCTCTGGAGACCACCTAGTCCAACTCCCTGTTCAAGCAGGGACACATGGAGAACATTGCATAGTGCCACATCTAGGCAGGTTTCGAGTATCTCCAGAGAAGGAGCTTGCACAGCCTCCCCGGCAACCTGTTCCCATGCTCTATCACCCATGCAGTAAAGAGGTTTTTCCTCATATTCAGAGGGGACTTCATGCATTTCAGTCTGTGCCCATTGCCACTTGTCCTGTCATTGGGCACCACTGGGAAGAGTCTGTCCCCACACATTGAGTCCCCTCCTTAAGGTATTTGTGTACATTCATAAGATCCCCTCTCAGTCTTCTCCAGGCTAAACAGTCACAGCTCTCTCAGCTCTTACTTATAAGAGATACTGCAGTCCCTCCTTCATCTTTGTAGCCCTCCGCTGGGCTCTGCAGTACTGCCATGTCTCTCTTGTACTGGGGAACCCAGAACCTAACACAGAGTATGAATGGGTTATTGACTCAGAAAGGAAGTGCTGTGCAGTCTGGTTAATCTAGAATGGCATGAACAAGCCCTCCACGTGAATCAGAAGATATTTACACGCTTATAAAGCTGTTTGCGTTTATATTACAAATATAGTATGCATAAAACGGTTGTGTTGCTGAGTTTCTCCAGACCTTGGGCAGGTCCACAGCTTGTGAAATGAGGATCTCATTTCTGCTGTGTAGGGAAGGGAGGAACTTGGTGAGTATTAAATATCAGAGTGAGATGCTGAAAGTCCATGGGAAAGACACATCTGCAATTTATTAATAACCAGAACCTGGTCTAGCAGTCTTAGCAGTCATATTTCTGGCTCCTTTGAGATCACTGTGTGATCTGTCTTGAGCCTATTTATGTATTTTCAATAATGAAGCTCTTAAACCTCATGCACATTAATCCCTTTTCTGTCTGCTCACTGAACTGGGGAAAATCAAAGCTAGTGGGAGGTGGCTGAAGAAGTGTCAGAAGAGCCAGGGTACTTTGTTCCTCCTAAATGTTTAACTGTTGTAAAGAAGGCGTTAACCAGTACCGTGGGATGGGACAGCTCTTCTTGTATGGGTTGGTCAATACTGAAATGGTTTGTAAGCAGTCTGCAACAAATTGTGTCATAACTTGCTTTTTGCTCATGTCATTATCTATTTGTTTTTTAAAG
Seq C2 exon
CTGAAAACACGGAGGAATGTGTCATCCTGTCATCCTATGTCTTGCACAATTCTCTGGCCTATGGGGCTGACTGGTCAAGGCTGTGCCCGAGGGATTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008750:ENSGALT00000014239:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(22.5=15.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGCTGCTGTGGGACA
R:
GAATCCCTCGGGCACAGC
Band lengths:
260-1823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]