DreINT0059740 @ danRer10
Intron Retention
Gene
ENSDARG00000024744 | dpp6b
Description
dipeptidyl-peptidase 6b [Source:ZFIN;Acc:ZDB-GENE-070705-88]
Coordinates
chr2:12734557-12735369:-
Coord C1 exon
chr2:12735300-12735369
Coord A exon
chr2:12734752-12735299
Coord C2 exon
chr2:12734557-12734751
Length
548 bp
Sequences
Splice sites
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
3' ss Seq
TCATTTTTATTGACTGATAGGGA
3' ss Score
6.39
Exon sequences
Seq C1 exon
TTCTGAGCATGCAGATTCTGAAGCCAGCGGTGTTTGTGGCGACATCTCATTACCCCTTACTGCTGCTGGT
Seq A exon
GTAAGTGATTCGCACACACACGCACACCTCATGATACACAGCGATCCCGATACAAAAATAAAACATAAAGACTGCAGTGTGTCTCAGCTGCATGAGGAATAACTGTACTGATGTGTTTTGCTTCATGTAGCTCCATCACTGCTAGGAGCAAATCTCATTAAGCATAATCAAATGTCCCAGGACTAAAGTCAAAATAAAACACAATACTTTTTTTTATTTTAGGGTTATTATGCTTGTTTGTTTTTAACACTTTCTCATTACGTAAAAATGAATGTAACATAGGTAAATACGATGTAAATAAATTTAATAATTTTCAACCGTTGACTTTGTTGGAAAAACAATTACTATGGTAGTCGGTGGTTACCTGTACATGTTTTCAACATTCTTCTATTTATCTTCTTTTGTGAACTATTAATTTTACTAGTAATGTAGCTTAAGTTTAACCCAAAATTTTTAACTCTGAAATTTCTTACTGACCCTCATGTTGTCCTGAAGACCTTTGTTTATCTTCTTTTTCATTTATCTTCCTCATTTTTATTGACTGATAG
Seq C2 exon
GGATGGCACCCCCGGTGGTCAGATGGTAACAGAACAGTTCCAGGTGGACTGGAGCACTGTGCTGGTCAGCTCCTTCAACACCATAGTCGTGCGTTTGGATGGGCGCGGCAGTGGCTTTCAGGGCACAAACCTCCTTCATCGCGTCAAGAAGAAACTGGGGGAGTTTGAGGAGAGAGACCACCTGGAAGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024744:ENSDART00000037848:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032616=Peptidase_S9=PU(24.6=78.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCATGCAGATTCTGAAGCC
R:
CTGAGAGCTTCCAGGTGGTCT
Band lengths:
262-810
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]