HsaINT0051808 @ hg19
Intron Retention
Gene
ENSG00000130226 | DPP6
Description
dipeptidyl-peptidase 6 [Source:HGNC Symbol;Acc:3010]
Coordinates
chr7:154664334-154667810:+
Coord C1 exon
chr7:154664334-154664403
Coord A exon
chr7:154664404-154667615
Coord C2 exon
chr7:154667616-154667810
Length
3212 bp
Sequences
Splice sites
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
3' ss Seq
GCCCGGGATTCTCTTTCCAGGGA
3' ss Score
8.57
Exon sequences
Seq C1 exon
ACCTGCCCATGCAGATACTGAAGCCAGCAACCTTCACCGACACCACCCACTACCCTCTGCTCCTGGTGGT
Seq A exon
GTAAGTATCGTCACATCTGTCTTTCCCTGGTGCTCGTTCTGGGGCTCCGTGACACCCATGATAAAGGAATATTGAACTCTTAAGAAAAGATAAGCAGGAGAAATGACATTGTTGCAAACTGAAAACATAACATCGTTTAGCCCAATGTCAGGTTCTTTAGGAATCTTGGAGACACCCAGAGGTTAAAGGAAAGTGGGTGCTGTGTACCCACCGCCTCTCCCCAGGCTGCCTCAGGTTCTGTGACCATAAAGTGAGGCTGCTGGGATCATCGTAGTGGCATTTTGCATGACAGGCTCACCGGAGGCTGGCAGGGGACAGGTCCCAAGACACAGAGACACAAGATGGCTGGAGCCTGGGACCCGCACCCTGAGCCCGTGGGTCTCACTGGCTGGCATTTCTGGCCACTGCCGTGAATGCCCTTTTTTCACCAGCAAAGAATTTTTTCAGCTCTTTCTTATATTCATTAATAAAGCCTCCGGTTTGGGTTTTGAGAACAACTTTTTGTGCTCTGTAAATGCCTTGAAGGTGTTGGGTCTGATTAGGGAACTCAGTGCTAGGAGCCGGCCCAGTGCCCTGTGCATAGGTTCAAATGTTGCCTGACAGCCCTGAGTCTAGGTGATGTCCACGCGCTGACACCGCACGGGGAGGCAGTGCAGAGGGGGCCACCTGGACCGTTGAGCAAATGCCCCAATGCACCTCCTGGTCTGTACTTTCAAGACCACGGAGCAGGAGAAACTCCTGCACCCCTCGTAGCCTGGGAGAGCCGGCTGAAGCGAGGCCTATGCTGGGCTGTGTTAAGGATGCCAGTGCAACTACCCCCTGAGTAAACGCTGGCACCTGATGGAGCTCTGATTAACCCTGGTGTCTTGCCCTGCTCCCTTCCTGAGGGCTGAGTCCCTAAATAGCAAAAAGGTTCCATTATAGAAACGCCCCAGGGCACAGATTCCAATAGCTGATTCCGTTTTGCAATTAACCCACTTTCCTTAATATCTGGACTGCTTTCACACTTTCCCAGCAGCCATGCATGCACACTCACCCACATGCAGACACACGCACCCACACACAGGCACACGCACATGCACACACACCCACATGTGCACACATGCATCCACACACACACATGCACACACGCATACATAAACACACACATATGCATACCCACATGCACACACACCCACAGGCACACACATGCACACACACGCACCCACACACATAGGCACACACACATGCACACACCCACATGTGCACACATGCACACACACACGCACCTGCATACATAAGCACACACATGCATACCCACATGCACACATACACACACATGCACACACATACGTGTGCATACGCATCCACATGCAGCACATATGCACATGTATGTGTATATACACATGCACACATGCACACATCTATACACACCCACACCCACAGACCCACACACCCCACACATGTGCACACACACCACACACGTTTCCTGCCTCCTTTCTCTTACTAAACCAGATTTTCCCCACTTTCTCCAGGATGCTAACAACTTCCGAACCAGCTTTCTTCCCCTGCACACTGGTTTCTTCAGTGATCTTAAAGGAAATCCCCAAAAGCATTTCAGTTTACAAAACAATTCTCCTTCCCTTCAGAGGTAAAAGTGGTCGTGCCCGGTGGAGACAGCTGAGCTCTGCTGAGCTCGGACGGGACCGGCCAGGCAACCCCACCCCCTGGGTGCACACTCACTCTGGCCTTGCTAGCTTGCCTTGGAGGCTGTGTCTTTTTGTTTGTTTCTCACTGTGACATCAAATGTGATAGCAAGGAGATCTGGAGTCCCTGAGCCCCTGCTTCAGATTAAAAAAATCCAAAAGAAAACAAAGGCACACTCGACATAGAGCAGCACCATGACTCACCAGGACCCTAAGCATGCAGCACTCGAGCGCGCCGCTCCTGGCCCGCTCCTCCTGCCCCCACCCCACTCCTCAGCCCTTGGCAGACAGCTGGGAGAGTGCCCGTGGTCGAAGCAGTCACCTGGCTGGAGCCACTCTCAGTTGGGGCACTGCTCCCTGCTGTTCCAGGGAGGCAGGCTGGACCTGGGGCTGACTTTCTCTCCTGTCCATCTTTTTCCCGGCAAGAGGGAAAATCACTTAAAAACTTCCCCACACCCATAAGTATGCTGGTCAATGAGGAACAACCAGTCCTGCATAGAAAATGGCCCTGTTCCCAGCCTGGGCAACATAGCAAGACCCCATCTCTACAGATTAACAGATTTTTCTTTTAATTAGCCAGGCATGGTGGCACATGCCTGTGGTCTCAGCTATTTGGAAGGCAAAAGTGGGAGGATTGCTTGAGCCCCAGAGGTCAAGCCTGCAGTGAACCAAGATTGTGCCACTGCACTCCAGCCTGGCCGACAGAGTGAGACCCTGTCTCAAACAAAAGAAAAAAAAAGAAGAAAAGAAAAGAAAGAGAGAGAGAGAAGGAAAGAAGGAGGGGAGGGAGGGAGGAAGGGAGGGAACAGCCCTGTTTGAGGAAAAAGAAAACAGCCCTGTTTGTGGCACTGGTCGAATCCCATGGTCCAAATGCCCCACCATGGATGCCTTTCAGCCAGCAGTGCTGGGCTCGCAAATGAAGAGCTGGGAGGAGAGCACAGTGGGAGCCGCCAGCCCAGGTCGGAGGCCACACTGCCCAGAGCCAATGGCTCCTTGACTCCCGAGCAGAGGGAGGGAGAAAGGCCACCCATATGGCGGGTTTGCTGTTACTTCCGACTTAACAAGAGACAGACCACGTCTTCAAGCCAGGGATGTGGCTAGAGTCAGCGCGGCCTTGTCACTTGTGATGGGTACTGAGAGGTACAGCCTGGGACATCTAGAACCCAGGAAAGAGAAACCTTCTTGCCGTGTAGGGAAGGTCCCCGCAGGGAGAAGGTGGGAGGATTTGTATTGTTTCCCTCACCAAATAGATGCTTTTTGGTGGCCGTCCCAGACAGCGCCGGTGTGTGTAGGGATGGCCCTGGGTGTCCTAGGCTCTTGGAGGTCTCCTCTTCCTCCTCACTTTATGGGGTGTGGATAACACCTGGCTCACCTGCCCGGGGCAACAGAATCTGGGGTATGGAGTTGAGCGTGTGGCAGCCGGGTCACGGGTAAAATCCCTTACGGGGGTCATCTGACGTGGCAGCTGCTAGACCAGCCGCCACCCACCACGCAGCAGGCCTGCTGAGCCCGGGATTCTCTTTCCAG
Seq C2 exon
GGATGGCACCCCAGGCAGCCAGAGTGTGGCTGAGAAGTTCGAGGTGAGCTGGGAGACGGTGATGGTGAGCAGCCACGGCGCGGTGGTGGTAAAGTGTGACGGCCGTGGCAGCGGCTTCCAAGGGACCAAGCTCCTGCACGAAGTGAGGCGGCGGCTGGGCTTGCTGGAGGAGAAGGACCAGATGGAGGCCGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130226-DPP6:NM_001936:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032616=Peptidase_S9=PU(24.8=78.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)