GgaINT0094925 @ galGal3
Intron Retention
Gene
ENSGALG00000006314 | DPP6
Description
NA
Coordinates
chr2:7570329-7572443:+
Coord C1 exon
chr2:7570329-7570398
Coord A exon
chr2:7570399-7572248
Coord C2 exon
chr2:7572249-7572443
Length
1850 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
GATGGCTGTTTGTGTTTCAGAGA
3' ss Score
9.62
Exon sequences
Seq C1 exon
AATTACCAATGCAGATCCTAAAGCCAGCAACATTTTCAGACATGACGCACTATCCCTTGCTTTTAGTTGT
Seq A exon
GTAAGTTTGCACTCTTCTTTTGTTTCTCTTCACATTATGGCAGCGTGAAAGTTTTAAGATTGGCCTGAGCCTTTTAATATATGACATAATGAGTACTAGACTGTTTAACACCTAAGTCCTGCTCATTTCCCTTCTCACATGAGAGATGGGCAAGGTTGGACACAGGTTCCTTCTCTCATACGTTTGGGCCAAGGGTTTCACTTCCAAGGAGGGTGTCCTAGTCAAATCCTACATGCATTATAGGATTTTGTGCAAATATACTCACAATTCAGTTATTTAGGAGGGCATAAACAGGAGGAGGGGAAAGAAAAGATGGACACTGACGTTCTGTCCTGGCGCTAAGCTGCTTGTGTGGTTCGGTGGAAAACAGGGCCCTAACTTTATGCCACTGAGCAGAGTGTGCTAAGTGCTTCTTTGAGAAGGGCTGGGAGTGGCTGACCTGGGCAAGCAGGAGATCCAGCATCAGGGATCTCAGCTCTCCATGGTTTGCAAAAGTATTTCAGCAGACCTCAGGCAAAAGAGAAACTTGTTTCCATCCAAAGCAGGAGCTACGGTCTCTACTGAGACACTGTAGGAAGGGGAGCATCCTGCTTTCCTTCTTAGTGCCATTTGAAGATCTCCACAATTTCAGCATTTGTATTAGGCAGGTAGAATTTCCTCCTGGGGAGCATAGCAGATGGGTATCTTTTTATGCAACATTTAATAATATGCAGAACTGTGTTTTTTCTGGAAATTTGGGAAGAATCCAGGGGAGGGAATTGACTGACCTTGGAGACACCTTCCTGGCCTGCTGCATCCTGCTGTATCACTTGCTTCCTGCCAGGGGATGCCCTGCAGCAGAGAAGCCCCATGTAGGAGTGAGAGAGGTAGCTGCATGCCTGAACACCACACTTCACTTCCTTCCATGAAGGACAAAAACACTGCAATAAGCACGCCATTACATCACAGAATTACTGCAGAGAAAATGTACTTCATTAGACAAGTGCTTGAGGAAGATTGGTACTCATCAAGCTAACAGCACTTGATTAGGCTGCCTCTGAAGCTGAATGTGCCTGGGTCTCATCTGAATAAATGCAAATGACTGAAGTCACATGCACATTAAAAACCTGCATTGAGTTGTCTGATCTTCCCAAGAACCCCCCAGAAAGGACAAGAATTGGGTGGAAGTGCCTGCAGCTCTACAGTAATCCCAGCCTAAAATACTACTTCTCATTACCATCACCTCTTGTTTTTTTCTGGGCTGTCTTGCAGAAGTGGGCTCAGTATTTCTTGTGCAGTGCCCTTGTGCAGGCTCTGGGCAGGTTGCGAAGGTAGTCTTGCCCGTGTATTCCCCTTACCTTAGGCCAACCTGGGCATTTCTATGCTCTTGGTTTTACCACTTCTAGAAGTGTTCTTACCCTCTGCGCTTGCCTCAATGGGAGGTGATAGTCGTGACTGACAGCTCCATCTGCAGCCACTCAAGAAGCTGATGGGAGAGGGATTGTCTGCGTTGGGTGAACAGGGGTGGTAGATGAAATTTGAACACCTGCCAGTGAAGCAAGGGAGAATGAATGGCTGCAGGCTTCAACCAGTGTGTCTTAGCAGCATGCCAAGCCAGGCTCCTTGCAGCAAATCCTCCACCAGAAATACCCTTTGGGAGTGGTAGAGAAATGGATACAGATTAGAGCCAGAGATGGTAGAGAAGTAGATACAGGTGTTAATGAGGAAAACTCCACTGACTTCTGCGTCACATCACATCCCATTACCACAGCAAGCCCATGGCCCTGGGAAGAGCTTTGGGCTCCCATTTAGTGATGTTCCTTTGCTCCCTGAAGCACTGTACCTTTTCCTGATGGCTGTTTGTGTTTCAG
Seq C2 exon
AGATGGGACGCCAGGCAACCAGATCGTAACTGAGAGGTTTGAGGTGACGTGGGAGAGCGTGATGGTCAGCTTGCACAACGCCATCGTGCTGAAGTTCGACGGCCGCGGGAGTGGCTTCCAAGGCACTAAACTATTGCACGAGGTTAAGAGGAGGCTGGGCCTTTTGGAAGAGAAGGACCAGCTGGAAGCTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006314:ENSGALT00000010210:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032616=Peptidase_S9=PU(25.4=80.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAATGCAGATCCTAAAGCCA
R:
GCTTCCAGCTGGTCCTTCTCT
Band lengths:
255-2105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]