BtaINT0052402 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021941 | DPP6
Description
dipeptidyl-peptidase 6 [Source:HGNC Symbol;Acc:HGNC:3010]
Coordinates
chr4:117658575-117663151:+
Coord C1 exon
chr4:117658575-117658644
Coord A exon
chr4:117658645-117662956
Coord C2 exon
chr4:117662957-117663151
Length
4312 bp
Sequences
Splice sites
5' ss Seq
GGTGTGAGT
5' ss Score
6.05
3' ss Seq
GCCTGGCCTGTCTCTTCCAGGGA
3' ss Score
10.48
Exon sequences
Seq C1 exon
ACCTGCCCGTTCAGATCCTCAAGCCGGCGACCTTCACCGACACCGCCCACTACCCCTTGCTCCTGGTGGT
Seq A exon
GTGAGTATCCCAGGGGCAAGGACCACACCCTCAAGAAGGTGGGAAGGGGAGCCCAATCCCGCTGCACACTAAAATCAGAGAGCAATTTTAGCCCCTTGTCTGTAACTACCAGTGACCCCGGATGTTAAAGGAAAGCCTCGGGGGATTCTCAACATTGAACCCAGGTGCTGAGTCATATCCCATGGGTCCTGCTGCCGTGGCTGCCCAGCGGCCCCAGGACAGCGGGAAAGCTGACTGGGGGTCTGACCTCACTGGGCAGGGCCCAGGGCCCCCAGAAAACGAGGTGGGCCTGGCGGGGGGCTCGCCGGGGCCAGCAGCCCCTCCTGCACCACCAGGCACCCTTGAACACCAAGTGTCCCCACAGGACAGTTTCAGGTCTGCCCCTGCTAACTGGAAGCCTCTGGTTCGGATTTTGAGAACCCCTTTGCAGAGCCTTGCAAGCACCTCTCACGGTGTTGTGTCCTGACTCGGGCTCCTGCCCCGGTGTGCACGGGGCCGTGGGGCAAGGGAGGCTCTGGGAAGAAAGGGCCAGGGGAGGGCAGAGGCCCGCACTGGGTCTGCCCCAGGGCCCCTGGGGAAGTCAGCACCCAGGAAGGCGCCCAGAGCCTGATAGCTCCGTGCATCACCCCGAGCACCCAGCCAGGCCCTCAAGGACAAGGCTGCACCCGAAGACGCCCGGCTGGACACACGGTCCTGCCCAGCTCGTCACTAACTGAGCACTTCTCCTCACTGTCTAGGCACTTCACCAGCAAGCAGACACACACACACATGTATACAGACACACATATATACAGACACACATACACATACATACACATGTATACATACACATATATACAGACACACACACATATATACAGACATACATACACATAGACACACACACACATATATACAGACATACATACAGAGACACACATATACAGACATACATGCATACACGTATATACAGACATACACATGTACACACACACACACATACACATACAGACAGACATACACACACATACACATGTATACAGACATACACATACACATATACACAGACATATACATACACATATACATGGAGACACACACATACACATACATACACACATATATATATATATATATGGACATACACACACATACACATGTATACAGACATCCATACACATGTATATGGACACACACACATATACATAAACACAGACACACACGTACACATATACACGGACATACACATATATATGGACATACAGACTCATACACGTATATACAGACACACACACATATACACAGACACACATATTCACGGACATAAACATACATATGGACATACACACACATACACATGTATACAGATATACAGATATACACATGTATACGGACATACACACACATATACAGACACACAATACACATTACACAGGTACACATATACACGGGCATACACATATATGTGGACATACAAACTCACACATATGTACAGACACACACATACACATAGACACACACGTACACATACATATGGACTCACACACACACACATATATACGGAAACACACAGATACACGTACACACCATCAGATGGCCATGACACACAACAGCACCTACACACCCACGTGTTCACACACACACACCAGAACACATAGCACATACATACAGAGCACATGCACACACGTGGAATTCTCCAGGCAAAAATCCTGGAGTGGGTTGCCATTCCATCCTGCAGGGGATCTTTCCCGACCCAGGAATGGAACCCATGTCTCCTGCATTGTAGGAGCCATTACTGTCTGAGCCATCAGGGAATCCCCCTAATTCCCTCAAACCAGGGGCCACCGGAAAGAGCACTACAGCGTGGTCACTCATGTGATGCGCACTAAGGGGGCAGCCTGGGAACCCGCCTGGGAAGGATAGGAGAGGTGGGCCGTAATGGGGAGCCAAGCAGGAGGGGAAGGGGAGGACTCTTCAGGGTCTCTCCCCAAGAACGGGCCCTTCAGCGCCCTCGTGCTGGGGGGTGCGGATGTGTGGAGCTGGGCGTGGGGGCTGGCTCTGCCCCAGGAGAGCATCCCTAGGCTCCCGAGTCTATGGGACAAGTCACCACACCCCATGCCCTGCAGCTGCGTGCTCAGGCCTGGCCTGTCTCTTCCAGGGACGGCACCCCGGGGAGCCAGAGTGTGGCCGAGAAGTTTGCAGTGACCTGGGAGACGGTAATGGTGAGCAGCCATGGGGCCGTGGTGGTCAAGTGTGATGGCCGCGGCAGCGGCTTCCAGGGCACCAGGCTGCTGCATGAGGTGAGGCGGAGGCTGGGCTCCCTGGAGGAGAAGGACCAGATGGAGGCCGTGCGGTGAGCACCCCAGCGGCGCTGTTGGAACGGGGTTGGGGGGTCTCATCTCTACCCGGGTTGCATCGTGGTCTTGTTTCCTGGTGGTGCACACATTCTGCCTGCGCTTTGCTGGCACCCCCAGAAGTCTCTGGTGATTCCCCAGTGAATTCCTGCCAGCCATATGCTCCCAAAGACCAGGGTCCTAGTCGCTGCACGGCTGGTGGCCTTTCTGCTTTGCTGATTGCAACAAGGTGCAGAGACCGTGATGTGGGTCTTTGTGGGTTCCCGATGCTGTGGTCACGGACCTTGGCCACTGATCATGGGGGGAGGGCAGGGAGAGGGAGAGAGAAGGTGAGCCATGTAGCCAGTCACCTCCTTCAAGAGAAAGGAGTGCAGCAGGCAGATTGGAAGCCCCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTCATTCTTTTACATGTAGCTGCCCAGTTTTCCCAGCACCATTTATGAAGAGGCTGTCTTTGCCACATTGTATATTCTTGCCTCCTTTGTCAAAAATAAGGTACCCATAGGTGCATGGGTTTATTTCTTGGCTTTCTATCTTGTTCCATTGGTCTATATTTCTGTTTTTGTGCCAGTACCATACTGTCTTGATGACTGTCAGTTCAGTTCAGTCACTCAGTCGTGTCCAACTCTTAGTAACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTCAGACTCACACCCATGGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCATCCCCTTCTCCTCCTGCCCCCAATCCCTGCCAGCATCAGAGTCTTTTCCAATGAGTGAACTCTTCACATGAGGTGGCCAAAGTACTGGCGTTTCAGCTTTAGCATCATTCCTTCCAAAGAACATCCAAGACTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTTGGTGCTCAGCTTTCTTCACAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACCATAGCCTTGACTAGATGGATCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTTCTTCCAAGGAGTAAGGGTCTTTTAATTTCATGGCTGCAATCACCATCTGCAGTGATTTTGGAGCCCAAAAAAATAAAGTCTGATACTGTTTCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGATTAGATGCCATGATCTTCGTTTTCTGAATGTTGAGTTTTAGGCCAACTTTTTCACTCTCCTCTTTCACCTTCATCAAGAGGCTTTTTATGACTTCATCAAGAGGCTTGATGATTGTAGCTTTGTAGTATAATCTGAAGTCAGGAAGGTTGATTCCTCCAGCTCCATTCTTCTTTCTCAAGACTGCTTTGGCTATTGGGGGAATTTTGTGTTTCCATATGAATTGTGAAATTTTGTCTTCTGGTTCTGTGAAAATTCCACTGGTAATTTGATAGGGATTGCATTGAATCTGTAGGTTGTATTTGGTAATATAGTCATTTTCACAATATTGATTCATCCTACCCAGGAACATGGACTATCTCTCTGTTTATGTCATCTTTGATTCATTTAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGTGCGGATGTGTGGAGCTGGGCGTGGGGGCTGGCTCTGCCCCAGGAGAGCATCCCTAGGCTCCCGAGTCTATGGGACAAGTCACCACACCCCATGCCCTGCAGCTGCGTGCTCAGGCCTGGCCTGTCTCTTCCAG
Seq C2 exon
GGACGGCACCCCGGGGAGCCAGAGTGTGGCCGAGAAGTTTGCAGTGACCTGGGAGACGGTAATGGTGAGCAGCCATGGGGCCGTGGTGGTCAAGTGTGATGGCCGCGGCAGCGGCTTCCAGGGCACCAGGCTGCTGCATGAGGTGAGGCGGAGGCTGGGCTCCCTGGAGGAGAAGGACCAGATGGAGGCCGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021941:ENSBTAT00000029251:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032616=Peptidase_S9=PU(73.2=78.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]