MmuINT0052947 @ mm10
Intron Retention
Gene
ENSMUSG00000061576 | Dpp6
Description
dipeptidylpeptidase 6 [Source:MGI Symbol;Acc:MGI:94921]
Coordinates
chr5:27712608-27714566:+
Coord C1 exon
chr5:27712608-27712677
Coord A exon
chr5:27712678-27714371
Coord C2 exon
chr5:27714372-27714566
Length
1694 bp
Sequences
Splice sites
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
3' ss Seq
TGAAAACCTATCTCTTCTAGGGA
3' ss Score
7.87
Exon sequences
Seq C1 exon
GCTTGCCAATGCAAATCTTGAAGCCGGCCACCTTCACCGACACAGCTCACTACCCCTTATTGCTCGTGGT
Seq A exon
GTAAGTATGACTGCCTCTCTTTCTCTCTTCCTTCCTTTTTCCTTCCTTTCTTCGTCACTCCCTCCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTCCTCCCTTCCTTCTCTCCTTTTTCCTTTCTTCCTTCCTTTCTCCTTCTCTCTCTTCTTTCTCCCTTTCCCCTCCTCCTTCTCTCTTTTGTTTCTGTCTTTGTCTCTGTCTCTCTCTCTCTCTCTCTCCCCCACTCTCTCTTCCCCCCTTCTCCCTCTCCCTCTCTCCAGATGCCTCCTTGAGACTCATCAGTGCAAGAAAAGGGAACAGTGAACCCTTGAGGGGAGTAGGGTGGGTAGATGATGTTGTGTGTTTAGCTCTTAAGACAGATTGACTTGTTACTTGTTACTGTAGCTCCTGAAGATCCACTGCAGGTAGAAGTACAGTGGTGTTTTGATCATTGTAGTGAGATTGCAAGAACATTTCTGACCTTGACAAGTATATAACACCATGGTGCTACAAGATCATATCATCTAATAACATCTTCATATAGCTCAGTTTGATATTTACACAACAGCACGGCCCAAAGGTACAGTTCTCAGAACACATCCTTGCCCTTAACTGATGCATAATAATGACACAAGAGTGCCCTCCACCCCACATCTGCCCACAGCATGGGCTGCTTCTCATGGTATAAATTTCCACTGAAAGTCCTTTGAAGCCACAGCATGGTGTCCTTAGAGGAGAAGTAAAGAGCCAAGAGCCAAGTCCAGTACCTCCTCCCCAAGTCCTGCCTCCAGGAGAAAGTGGGAAAGTCACTGGGCCAGCCTGGGTGTTGCTTCTTACAACTTAACCATAAAGAAGGTTTCTAAACCAAGGAGTGGCTGAAGGAATCCAACATCCTGGGCACTCCAGAGACAGGCACGAGAGTGGGAGCAGATCATGCTGTGTCAAAGCCTAAGCGGACAGGAAGAGATTCAGCATGGTGGAAATGCTCACCAGAGTTCAGGGGACAGAGCTAAAGTGCTTGATGCACCAATACAAGGATCTGCGTTCCAGCCCCAGAAATTATGTTTTTAATATATAAGGTAGACCAGGCAGTGGTGGCACAGGCCTTTAATCCCAGCACGTGCGAGGCAGAGGCAGGTGGGTTTCTGAATTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTTTTGAAAAACCAATAAAATAAAATAAAATAAAATAAAATAAAAGGTATAGTAACATACCCTATAATCCCAGCCCTGGGGAAGCCAGCAGGACTGTCCCTGGGCCTCCTATCTAGGCCAGCCTAGTCCACTTGCTTGAGTTCCAGGCCAAGAGAGACCCCAAAAACACAAAACAAGTCACATAGTGCCTGAGGAGTAACATCAGAGTTGACCTGTAGCCTACATACACACACACACACACACGCAGCACACACACACACACACACACACACACACACACACACTTGGGATGACTGTGGCGCCATAGGGTTCTCTGAGGAGTATATGAATGATAGCTGGCTCACGCACCCTAGACAGCAGAGCCCGAGGTGCTGGAGCAGTCCTAGGGCACCAGGTAATGGGAAAGACACAGCTTCCTGTGAGAAAGCTTCCCAGATGTGCTGTTTCAGCCACCATGCAGCACACTGAAAACCTATCTCTTCTAG
Seq C2 exon
GGATGGTACCCCAGGGAGTCAGAGCGTGACAGAGAGGTTTGAGGTGACCTGGGAAACAGTGTTGGTGAGCAGCCATGGAGCCGTGGTGGTCAAGTGTGACGGCCGAGGCAGCGGCTTCCAGGGAACCAAGCTCCTACAGGAAGTACGGAGGCGGCTAGGCTTCCTGGAGGAGAAGGACCAGATGGAAGCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061576:ENSMUST00000071500:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032616=Peptidase_S9=PU(25.1=80.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAATGCAAATCTTGAAGCC
R:
CTTACAGCTTCCATCTGGTCCT
Band lengths:
262-1956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types