RnoINT0050855 @ rn6
Intron Retention
Gene
ENSRNOG00000030547 | Dpp6
Description
dipeptidyl peptidase like 6 [Source:RGD Symbol;Acc:68402]
Coordinates
chr4:4032208-4033920:-
Coord C1 exon
chr4:4033851-4033920
Coord A exon
chr4:4032403-4033850
Coord C2 exon
chr4:4032208-4032402
Length
1448 bp
Sequences
Splice sites
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
3' ss Seq
TGAGAACCTACCTCTTCTAGGGA
3' ss Score
5.63
Exon sequences
Seq C1 exon
GCTTGCCAATGCAAATCTTGAAGCCGGCCACCTTCACTGACACAGCCCACTACCCTTTATTGCTCGTGGT
Seq A exon
GTAAGTATGACTGTCTCTCTCTCTTCTTTCCTTCCTTCCTTCTTTTCTTCCTTCCTTCCTTTCTTTTTCTCTCCCTCTCTCCCCCTCTCTTTCTCTCTTCCTTCCTTTCTCCTTCCCTCTTTCTCTCTCTCTCTCTCCTCTCTCTCTCTGTCTTCTCTCTCTCTTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACATGCCTTCTTAAGACTCATCAGTACAAGAAGAGGGAACTTCTTCTTTCTTAGGGGGAGAAGTAGGGTAGATGATGTTATCTGTTTAGTTCTTAAGACAGATTGGCTTGTCAGCAAAGGACAGACTTTCCCTGTAGTTGCTGAAGACCCCTAGAGGTAGCAGCACAGTGGGGGGCCCCAGATACCAGTGGTGTGTTTTTATCATTGTAGAGAGATTGTGAGAACATTTCTGGCCTTAACAAGTATATAAAATCATGGCCCCATAAGATCGTATCATCTAGTGACATCTTCATATAGCTCAGTTTGATATTTACACACCAGCGTGTCCCAAAGGTGCAGTTCTCCGAACACACCCTCGCCCTTAACTGATACATAATAGTGACACAAGAGTGCCTCCCCCCGCCCCCACACACCCGTCTGTCCTGAACCTGTCCACAGCATGGGCTGCTTCCCATGGTGTAAATTCCCACTGGAAGGGCTTCGAAGCCACAGCATGGTGTCCTTAGAGGAGAAGGAAAGAGCCAAGTCCAGTGCCCCTCCCCCACAGTGAGAGCTCCCGGAGAAAGTGGGGAAGTCACTGGGCCAGCCTGGGTGTTGTTTCTTCCAACTTAACCATAAAGAAACTTTCTAAACCAAGGAGCAGCTGGAGGAATCCCGCATCTTGGGCACTCAGGTGACAGGCATTGGAGTGGGAGCAGATCAAACCCCAAGCAAGCAGGAAGAGCTTCACCATGTTGGAAATGCTCACCAAAGTTCAGGGGACATAGCTAAAGTGCTTGATACACCAATCAAGGGCCTGAGTTCCATCCCCAGAAATTATATTTTTAAAATGTAAGGTATGGTGACATGCTGCATAATCCCAGGCCTCAGGAAGAGAGTGGGATTGTCCCTGGACCTCTCAGCTAGGCCAGCCTAGCCCATGTGCTTGAGTTCCTGGCCAGTGAAAGACCCCAAGAGCACAAAACAAGTCATGTAGTGCCCGAGGAATAACACCAGAGTTGGCCTCTGGCCTACATGCATGTGGTGCCATAGGATTTGCTGAGGGGTATGAGCAGCTCACCCACCCTAGACAGCAGAACCAGAGGCTCAGGAGCAAACACAGGGCACCAGGGGAAGAGAAAGACACAGCTGCCCATGAGAAAGCTCCTCAGATGCGCTGTTTGCCAGCCACCATGCCGCACACTGAGAACCTACCTCTTCTAG
Seq C2 exon
GGATGGTACTCCAGGGAGTCAGAGCGTGTCAGAGAGGTTTGAAGTGACCTGGGAGACAGTGTTGGTGAGCAGCCATGGAGCAGTGGTGGTCAAGTGTGACGGCCGAGGCAGCGGCTTTCAGGGAACCAAGCTCTTGCACGAAGTACGGAGGCGGCTAGGCTTCCTGGAGGAGAAGGACCAGATGGAAGCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030547:ENSRNOT00000045773:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032616=Peptidase_S9=PU(25.1=80.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAATGCAAATCTTGAAGCC
R:
CTCACAGCTTCCATCTGGTCC
Band lengths:
262-1710
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]