DreINT0060107 @ danRer10
Intron Retention
Gene
ENSDARG00000028118 | dscamb
Description
Down syndrome cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-031118-67]
Coordinates
chr15:6178816-6181837:-
Coord C1 exon
chr15:6181704-6181837
Coord A exon
chr15:6178970-6181703
Coord C2 exon
chr15:6178816-6178969
Length
2734 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
TTTATCTCATGTCATTACAGGTG
3' ss Score
9.35
Exon sequences
Seq C1 exon
TTCCTGGCCCTCCGGCTGGAGTTAAGGCTGCTGCTTCCACAAGCTCGGTGGTGTTTGTTTCCTGGCTGCCACCACACAAGCTCAACGGGATCATCAGGAAATACATCGTCTTCTGTTCCAACCCTTACCCCACG
Seq A exon
GTGAGATTCACGCCGAGCTCACACTGCACCATTTTAGTCCTGATTTTTACACAAAATCCTAAACTCTTATAACCTTGTCAGGCACTGATGTTGGATTTTTTATTTTGGATTGTGAAAGCTAAATTCTCCCATGTGAGTGATTATAGCGCCTCCCGGTGGTGAGTGCGGTTATACTTATGTCAGGTATTATTTGGTAGTTTGGTCATTCATTTCACTAACTTATCAACCATCAAAACATGATCAGGGAAACCGTTTGGATTTCCGCTTGGTAAAAAAACTATTAGTGTTCCATTTAGGATTGACCCTACATACATATACTATGCTGTTAATTGTGTAAGTGCATAAGTACATGTATAGTGAGCCGCAGCTATTGTATAACAGTGGTTTATTCTGTAGACAATCGAGAAAAAAATTTATAAACTTAAGAGGGCTAGTAATATAGACCTTACATTTTTTTTTTCTTTTATTCTGGCCGAAATAAAACAAAGACTTTTTCCAGAAGAAAAAATATTATGGGAAATACTTTAAAAAAATGTTTTGCTCTGTTAAATATTTGAAGAAAAAAAAAAAAAAAAAGAAAGAAAGAAAATTTACTTGAGGGCTAATAATTTTGACTTTAACTGTATATACAATGATGATGATGTTATATATGAATTAAGATCAATTAGAAAGGGAAAACCTGAATGAAAGTGATTTGATTATGATTAAAAGGATCAAATAAATGAAACAGATCAAATGGATGCTCAATATTCGGTAGTCTAAGGGTTTTCAATTAATCTTCATAATGAATTTCCTGAGTAACATGAATGTACACTGGTATCATTTGAGGAAAAGTGAATTTGTAATTTGTCAACACGTTGTAACCTGGATCAGCAAACGTGCAACAGAATAAGCCTGGATTTTTATGTTATCCTGGCTTTCTTAACCCTTTGATGCACAAGCTATGATGATCCACATATATGGATCATTTCATGGGTTTCTTATTTAATGTCATGCTTTGCTGGGAATTTTAATGCCAGTTTTATCTTTTCAAATCAGTTTATCTTAACATTAAAAATTCCCTTATATACATACTCCCTAATATACCAACAAAAAATATTTTTATTCAAAATGTAAGAAATACAGATCTGGCTTGAACTAATGCGCGTTTTTTCCTTCACTGCCATGCAATTCGTCATGCGTGGCCTTGCAAGCTCCTGCAGTGGCTTTTTTCAGATTTTTTTAAACATTGCTGCGCTGCATACAATGGCCACCAGCTGGCGCAGGGAACAACAATCTGGGGTACAATTCCCAAGCTCGTTGACTAACCATGGTCGCAGTTCCGTTGTTACATGGTTCGCCAAATTGCTGTGTCCCGAAACCATATTTCAATAAATAAAGAAACTAATAAATAAATTAAAAAAAAGATTGCGAACACTTCGTTTCATGCGCGCATTAGTTCATGCCAGATCTGTAAATAACGATTTGTGATGGTCAAAAACAAGTTAATTAAGAAATTCCTGGAGTCCCAAGTGAAGAAATTAATTTATTGCAAAGGTATTGAAAGTCAGAAGTCAAACCCGTCAGATGTGTTGTAGCCAATGACTGTAAAAAATATGGACGACGCGACAGCCCTTTTTCCCATTGAACGCCTTGAGGGCAAAACGCCTGCTTGACGGGCACAAACTGTCGCAAAAGACTGCTGAAATTGGAGCCAGACATGCGCAGAAGGATTGTCTGATGGAGCCAGAGGAGGAGCCGCGAAAATGAGCAGAGTCGAGCTTCCAATCAAACGCTTTATGTAAAATCAACCACGCCCCCCGAACTTCTCAGCATGCGTTTGCTGTCATATCAACACAAATGGATGTAATAACGTTAACAAATATGAGGGTTTTATATATTCAATCGCGCCAGCTCCGGGCCGCAGCGCATAACCTACTCGCAGCGTCGCGGGCTGATTCCGGCTCGCATGCGGCAGCGCCGGCTCGCTCGGCCGCCGCATCTGGCTCGATTGACTTGGGCTGGAATTGGGTAGTGAGTCCAGGCATCCGGAGTAGGTCCAGCAGAGGTAACATTAGTCAGTCTGAGCTCTAAGAGATAAGTCTCCGGCAGGCGAGAATCTAGCCGGAACTGTGTTTTGCTATCTGGGTGGCTAGGCGTGTATCAGCAAACTAATAAAGCCCGAAAAAAGCCCTGAACTTAGCGAATAAACAGTGTTCCACCAGGATCATGTATGTCAGAAACTATAGTTTACTGCTGAACTCATTTTGTCATGGTAAAATAACACAGAAATCGAATAATAACACTTCAGTCTACTTCAGTCTCCTGCCGAAGCTCAGACGCCGCGCTTTGAGAAACTGTCAATCACAGCTGTCAATCACGATGACACGCCCAGCATTAAATTACTGCTAAAAACAAACTGTTAACAAAAATGAAGATCTGCACCTATTTCAGCACAATAACCAGTGCCTTAATTGACCAGAACTATCTTTCGGGACATTTTATTGCAAGTGTAATATTTTTTTTTATTTGGGCTCAAGTCTCCTTCATTAACACGGAGGAGGCGGGCTTTATGACTTGTACTGCAGCCAGCCCCCAGGGGGCGATCTAACGGCCGAGACCTTCACTCAAACGTAGGCTTGCGGCACACTTGGTTGTAGCTAGACTCTACAGGAAATTGACTCTCGAGGAGTAGTTTATAGGGTGGAATTTGTTTTTGTGGCACTTACATTTTTTTTATCTCATGTCATTACAG
Seq C2 exon
GTGATTAGTGAGTTTGAAGCCGCACCTGATGTTTATTTCCGTCGCTTGACCAACTTGAACCAGAATTGGCAGTACAGCATCTGGGTTGTGGCGGTGACTGCGGCAGGTCGTGGGAATACCAGTGAAATTATCACCGTAGAGCCCCAAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028118:ENSDART00000148350:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(50.0=93.3)
A:
NA
C2:
PF0004116=fn3=PD(47.6=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]