DreINT0060557 @ danRer10
Intron Retention
Gene
ENSDARG00000078386 | dync1i2a
Description
dynein, cytoplasmic 1, intermediate chain 2a [Source:ZFIN;Acc:ZDB-GENE-060929-1086]
Coordinates
chr9:3177695-3181555:+
Coord C1 exon
chr9:3177695-3177785
Coord A exon
chr9:3177786-3181501
Coord C2 exon
chr9:3181502-3181555
Length
3716 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATC
5' ss Score
4.8
3' ss Seq
GTGTGTCGTGACACTAACAGGAC
3' ss Score
6.09
Exon sequences
Seq C1 exon
CTCCTGCACCCATGTCTCCCACTGCCAAATCTGTGGGCAGTCCAAGTGAGGCAGGGAGCCAAGACTCAGGAGACGGGACCACTGGACCACG
Seq A exon
GTAATCTCCATCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTATTACACTCTCTCATGTTTGTGGCAGGTCTGATATAATTAGCACTGGAGAGGTCTGTAGCTTTAGGATTAACCACCAGTGAAAGTGTCTGAAGTGTATTTTTGGGTAAAGTTCTTCCGCATTAACTCTCATTAGACACTTCTGAGGTGTAGCTAAAATATAATTTACTGCTGGAAAACCCCTGAGAATCGAAAACATGAAAAGACCTACCCAGAATTTTACACCATCCCCGATTTGCTATTAATGCAAATGTCATAAAATGAGCATGATATAGCATAACTAGCTATATTCTAATGCAGAATTAGATCAAACAGAGACGGCTAATCCAGGGTGCTTTGCAAACGCTTGAGTGCAACAGTGATGAAATAGTTGGTAACACTTTACAATAACGCCTCATTAGTTAAGTAAGGAATAAAGTACATCCTGGAGGTTGTTATCGCAGAGTAATGCCTGGTAAGGTTATCGGCAACTCGACTTGAAGTGGAGCATTGTTTTATAAGACTGAAAGGCTTTATATTTCTGAAACAACTGTCCTGGATGTACTTTATTTAGCTTATTACACAGCCGTTTGCAACAAAACAGTCATAATACATTGTTCTGAGTTATAATAGTTTATTAATATGTTAATTAAACAGAAATCTGACAGAAACCAAAACAGCTGATGGAGTATACACTAACCTGCGCATTATTCAGTCACAGGATGGCGCCAAACCGTCTAAAACACAAAGCTGACAGAAGCCAAAACAGCTGATGGAGTATACACTAACCTGCGCATTATTCAGTCACAAGATGGCGCCAAACAATCGAAAGCGCAAAGCTGACAAACAAAATCAGCTGATATAGCATACACTAACCTACGCATTTTTCAGTCACAAGATGGCGCCAAACCGTCTAAAACCAAACAGTCAAAAACAAAAAGCTGACAGAAACAAAATCAGCTGATGGAGTATACACTAACCTACGCGTTATTCAGTCACAAGCTGGCGCCAAACCATCTAAAACACAAAGATGACAGAATCCAAAACAGCTGATGGAGTATACACTAACCTTCATATTATTTAGTCACAAGATGGCGCCAAACAGTCAAAAACACAAAGCTGAAAGAAACAAATAATTTCTGCAATTATACCACTCTTAAACCTACACATACCCCCAAACCTGTCCCTAACCCTATCCGTATCCCACCCCAAGACCACCAGAAGTGTTCTGCAACACATTATGAACACGTCAAGTACATCGTACATGTGCATAGTAGGTCACTTTCTATATAGTGTGACCTATATTTCTAATAATATGTTATATTGTAAGAAATATCACTATCGCAATACTTAACAACAATTTTGCATATTTTCCCAGTATCGCGCGGTCCTACTCTTTAGCAGTAAACTTTTCCCAACATAAGTAAACACTAGGGATGTAACGGTATTGTAAATACCGTCATACTGCAATATTATTTTTTTCCGATATTACCGAAGTCGCATGACTCGGTAAAACTATAGGTCTTCTGAGAAAATTTGCTCAGGCGAATGAAGCGAACGGGAGGTAGCGAAAACTACAATTCCCATCAGCCCATGCTTGACCATCATCCCTTGCGGTCTGTTGTCGCTACAGATCCAGTAATGCGGAAATGGAGTGTGCTGCTAGAAGCGGGGATGAAAAAGAGCTGGAAAACCCTAAAGCGGGTGTTGTCGCTGCACGCGTACTAAATAGCGGTGTTGTCGCGCGAGTTCTTATCAGCTGTGTTGTCGCGCGAGTTCTTATCAGCTGTGTTGTCGCGCATACTGAATAGCGGTGTTGTCGCGCGAGTTCTTATCAGCTGTGTTGTCGCGCGAGTTCTTATCAGCTGTGTTGTCGCGCATACTGAATAGCGGTGTTGTCGCGCGAGTTCTTATCAGCTGTGTTGTCGTGCACGTACTGAATAGCGGTGTTGTCGCGCGAGTTCTTATCAGCTGTGTTGTTGCGCGCGTACTGAATAGCGGTGTTGTCGCGTGAGTTCTTATCAGCTGTGTTGTCGCGCGCCTACTGAATAGCAGTGTTGTTGCGCGAGTTCTTATCAGGTGTGTTGTCGCGCGCCTACTGAATAGCGGTGTTGTCGCGCGAGTTCTTATCAGCTGTGTTGCCGCGTGCCTACTGAATAGCGGTGTTGTCGCGCGAGTTCTTATCAGCTGTGTTGTCGCGCGCCTACTGAATAGCGGTGTTGTCGCGCGAGTTCTTATCAGCTGTGTTGTCGCGCGCCTACTGAATAGCGGTGTTGTCGCGCGAGTTCTTATCAGCTGTGTTGTCGCGCGCCTACTGAATAGCAGTGTTGTCGCGCGAGTTCTTAACCTGGGCCAAGGTTGAGTTGTCAACCTGGGCCAAGTCATATCTCTCTGTCCCAGAAACCTCAGTCCCAAATTAGAGGGTTTTTTTTCTGCTGCAGGGGACATGCCCAGAGATACCAGCTTTTACCAGATTATATTTATATGATAATTTTCCTTTAAACCCATCTCTATCTAAGTGAGTGAGTGATTAAATGTTGAATGTGATGAGTTTTCAACAATACTAAATTGAAACTTTATTTTTTTACATGGTTTAATATTTTTTTGTTATTAAAATTGAAGTTCCTGTTTCAAAGCTTACAGATAGATGGCTAATTTGTATGTCATTGACACTTTTGGCACTTTTTTGGAGTATTTTCATAAGTTTGTTTTTTCCTGTAAATGATTCAATAAATACCGTACCGTGACATTCATACCGAGGTATTGAAATACCGAACCGTAAAATTCTGATACCGTTACATCCCTAGTAAACACTAAAATACCATTCACAAACAAGCATTCAAGGGGGTTTTAACCTGATGTGTTTTTCATTTCTCAACTAGGATTAAATATTTGACTGTGAAGAATATTTCCACTTGGGATTTAGGGCACATGTAGAATAGGGAGGGGAAAGGGGTACATATATTTGGTGCAGTTGGGAATCATATCCCATTGGGACACAGTCTAAAATCGAACGTGTGTTTCCCACATGAGCTCAACTTCTCTGCCCAAAATGATCTAACCACTAGTCATGGCTCCAGCTATTAAAATGATATGAATATCCAAATGTTATAGACGTTCAGTGTAGGAAAGACCTGTGGGAGCAGTGTGGAGCTGCCGTGGGGAGTGTTTAACCTCTGATTATGGCTGAACGCACTCACACACACACTCAGAGATGCCCCGCAGGCCTCCGTGCGCACTCATATCCCGCACCGCTTCACCACTTCCTACACACACGCGGATCGTGTTTCCAACAGCACACACACCGAACCACACACAGCTTCGCTGACGTGAGGTAGTTTAGTGTCAGGATCAGTGAGGATTTGATGTCGATGAAATGATACCAGCCTGTTTCTTTTTCATCTGTGTAGCTTATTGCAAGTAATTCGTCCTTGTATTTGTCTCCCGAACATCAGAACTGACATGTGTTTATGTGTTTGTCTCATGTCTATAGACGCTTTTCTGCTGTCTCTACCTGCTCGAACATTGTGTTTTTTTTTAAGTGTGGTCTCTAACAGCCTCTCTGTCTTCTTGTATCCGTGTGTCTGTGTGTAACCGTGTGTCGTGACACTAACAG
Seq C2 exon
GACTCTGCACTGGGACTGTGACCCGTCCACTGTTCTTCTTCACTCTGAGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078386:ENSDART00000160567:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF115403=Dynein_IC2=PU(0.1=0.0)
A:
NA
C2:
PF115403=Dynein_IC2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]