DreINT0060572 @ danRer10
Intron Retention
Gene
ENSDARG00000103195 | dync1i2b
Description
dynein, cytoplasmic 1, intermediate chain 2b [Source:ZFIN;Acc:ZDB-GENE-090121-1]
Coordinates
chr6:3774601-3778156:+
Coord C1 exon
chr6:3774601-3774715
Coord A exon
chr6:3774716-3778065
Coord C2 exon
chr6:3778066-3778156
Length
3350 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
GTGTCTGTTTCACTATTTAGTCC
3' ss Score
7.43
Exon sequences
Seq C1 exon
CTGGATGGAAGAAAGGAAGGAGCGTCTCCCCCACAGGAAGACTCTGATCTGGAGAGAAAGAGGAGGGAGGCAGAGGCTCTGTTACAGAGCATGGGGATCACAGATGCCTCCATGG
Seq A exon
GTAAATGCATTCAAAATCACTTACTGTAATTAAGTCACTTCTGTTCTAACAGGCATGCTTTTTCAATTATTATTTATTTATTTTTATTAGTAACTCATGTACAACCTACTAAAAAAACAAAACACTTATAGAGAGTTTATATTTTATATATACTTTTTATATTTTGTAAAAGCTTGATCCACTTTCTATAACTTTTAGAATGCGGAGGAAAGACTTTACATTGAAGCATGAAAACAGACTGTAAATGGATAAAAAAGCTTTTTAGTTTTGGAACATTAATATAGATTTGGACCAAAATAATCTATGGGTGAGCTTAAAAAGGGATAGTTTAAATTCTGTCATCATTTACTCACTCTGCACTTATTTGAAAACATAGAAGACTTTCTTTCTTCTGTTAAACACAAAGAAGATATTTTGAAGAATGTTGGAAACCTGTAACCATTGAAAAGGCATCTGTAGCGCAAGCCAAAAATATGAGAAAATCATCCCTCACTAAACTATAGCATCCACCTTGACTCCACGCTCTGCGTTTGGTGTGAACACGTGTTTTAGTTTGTATGCAAAATGAGTGACTGATAATGGCAGCTCCCAAATTATTAATACAGCAATTTATATTTGAATACCAGATGATAAACAGAGCACACTCACAACTGACAAGTCTGAAAATGCCCTAAAACACAGCTTAAATATTTAAGTCAACACCATCAGAAACTTCGAAAATCTGTCATTATGAGACAATACACTGTAAATGTGAAAACTTAAACAAATTACTTTGATTTGTTATAATTAAATCAATTAAGTTTGACAAGCTTGAGTTTTCAGTAATAAATTAAGTTGTTTTATGTGTAACAAATTTTAGTTATTTATTTAAGAGAACAAAAATGGAACAGTACATATAGTACAGTACAAATAATTTCCTTCCAATGTTAATATAATAATAATAATAATAATACTATTTTTATGTTTTGTGGCAAGTAGAAATATTGTTCGCCATTAATAGCAAACAATACTTGTACTTGCTATAAATAAGTTACTAAAACTTGTTACACCTAAAAGAACTAAATTAATTTATTACTTATATTACTCCTTCGGCAAATTTAATTCTATTAATTGTAACAAGTCAAAGTAATTTGCTTAAGTTTTTACGTTTTACAGTGTAGTGCAGGGGTTCTCAACTGGTTTAGCCATGGGACCAACATTTTCACATGGTCATCAAGCAGCGACCCAAAATTTTTAGGAACTCTTATACAATTTTAGGAATTATTCTTAATTTGTATTTATTTGTTAACATAAACAAGTAGTGACAGATACATCATAAGAAATTCACCAAGACTTACAAATAAACAATATTTTATTGCTGTCATTTAACAAAATGGATCAAATTATAGTAATATTACAAAGTAAAAACGACAAATGCTGTTAATAATAAACTGTTAATAAAACATGTTTTCTGGTTTCTAAATGTTGTTTTAATTTAGAAGGTTTCATGCTCTCTTATGAGAGCTCCTCACTAAATATGACACTGAGGCTTTAAGTCTTTTTTGTCATCAATATATATATCCATACTTTACATATTCGGGGTCGCACTTGCGCTTCGACATATTTGTTGCAATAATTAAATGAAAATTCTTATGAAAAACGGTAGAGTTGTCGTGCACGCATTTCAAAATAAAAGTCCAGTATAAGCAAAAACAAAAGTAAAAAATGTAACTTTTGTTGTTTTTTTGACCACACACTCCGCGACCCACTGAAAACATTCCCATGACCCGACCCACCAGTTGAGAAACACTGGTGTAGAGAAAGCTGTATAGATTGTATTATTCAATAAAAACATATATATTATGACCCATTTTGCATCAACTGAGAAGAACCCAAATCATTAGATTAAACCTATTTTTTTGTACTCATGTAAATATCATCAATTTCCTTTTTTTATTTTTCTTTCTTTTCCTTTCTTTATTATAACAATTTATAATGTATGAAAGCTTGTTTCCCCATTAAGTGAAATAAAAGGAACACACAAACACACACACACACACACACACACACACACACACACACACACACACACACATATATATACATATATACATACACTACCTGACAAAAGTTTTGTCACCTATCTAAGTTTTAGGATCAACAAATAATAGCTTGACTTCTAGTTGATCATTTGGTATCAGAAGTGGCTTATATGAAAGGCAAAGGCCTCTAGATTACGCTTATATCACCGAAATAAAATATGATCATGTCTTGATTATTAATGATTTAATTAGGACAGTAAGGTCTGACTTTGCTTAGACAAAAGTCTTGACACTTAACAGAAATAATGTCCAGTATAGAATATAAAGTCATGCTGCAGTGGAGACAGAATGAATATTGTGTCTGACTCCATCATGAGCTTGGAGGACTGCATCCATACATCTCTGCAATGACTCACATCACTGATTAATAAAGTCATCTGGAATGGCAAAGAAAGCGTTCCTGCAGGACTCCCAGAGTTCATCAAGATTCTTTAGATTCATCTTCAATGCCTCCTCCTTCATCTTACCCTGCATGCTCAATAATGTTCATGTTTGGTGACGGGGCTGTCCAATCCTGGAGCACCTTGACCTTTTTTGCATTCAGGAGCTTTGATGTTGGGGCTGAAGTATGAGAAGGAGCGCTATCCTGCTGGAGAATTTGCCCTCTCCTGTGGTTTGTAATGTAATGGGCAGCACAAATGTCTTGATACCTCAGGTGGTTGATGTTGCCATCCCCTCTGCAGATCATTTGCACGCACCCAAACTGAATGGAACCCCAAAATCATGATTTTTCCTTCACCAAACTTGACTGATTTCTGTGAGAATCTTTGATCTATGCAGGTTCCAATAGGTATTGTTTTCCATGTGATCAACTAGAAGTGAAGTTATTATTTTTTGCTCTTACAACTGGGATCGACAACAATACTTTTGTCAAGTAGTGTGTGTGCAAATATATGTATGTATATATATTTATTTGACAGTATATATACAGTAAATACATATTTAAAAATTATTTATTAATTATTTTGGGAAACAACCTTTCTAAGGAATGATCACTGATGTGTTTTTAACGCATGTGGATCGTGCATGAATATTAACCACTGCCCTTTTTGTCTTTTCTTTTTTGTTTCGCTCAATCCTCTTCGATTTTACTGCTTTTTGTGCTTATTTACCACCTTACCCTTGCTTTTTCCTGCTATCTGTTTATTTTAATGTGTTTTTCCCTCCCTTTGCTTATGCATGTGTGTGTGTACTGTACATGCATGTGTGTGAGCGTAGTTCAGCCTCTGCGTGTGGTAACAGAGGATACGTGTCTGTTTCACTATTTAG
Seq C2 exon
TCCCCCCTCCCATGTCCCCTTCTGCCAAATCAGTGGGAACCCCAAGTGAGACGGGCAGCCAGGACTCCGGAGACGGCGGGACGGGCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103195:ENSDART00000159673:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]