DreINT0063541 @ danRer10
Intron Retention
Gene
ENSDARG00000101579 | epc1a
Description
enhancer of polycomb homolog 1 (Drosophila) a [Source:ZFIN;Acc:ZDB-GENE-070629-5]
Coordinates
chr12:40972159-40972736:+
Coord C1 exon
chr12:40972159-40972297
Coord A exon
chr12:40972298-40972399
Coord C2 exon
chr12:40972400-40972736
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
AATTTCTGTCTCTTCAACAGGAG
3' ss Score
9.47
Exon sequences
Seq C1 exon
TCTCTCGTGTCTAAGACGCTGGACTCTGTCAGCGCTCAGTTTGCGGCCTCTGCACTCATGACCTCTGACCAGCTACTGACCCTGAAGGTCAAAGAGGACGGCGCAGGAGGTGGAGTTAACGGAGTCATTCAGGCTTCAG
Seq A exon
GTTTGTTGTTTGCTCTTTGTGAGTCAGAATTGAGTACTTCAAAACTGATCAGTATTTGTTCATCCTGTTGTGTTATTAAATTAATTTCTGTCTCTTCAACAG
Seq C2 exon
GAGTTTACAAGGGATTGAGCATCTCCTCCACTTCCTCCTCTGCGCTCATCACTAGCCAATCAGCACCGACCGCTGCCCCGCCCACCTTCCTCTCCTCCTCTAGCAACTCCAACACAAGCTCCACCCACTCAGTTCACACCCCTATTGGTAACCATGGCAACAGCACAGCTAACTCCGCCTCTCAGGTCCTGATCGGCAACAACCTTCGTCTCAGCGTCACTGCGCCATCCATCGCCAGTCTGAACGCCCGACACCTTCCCAGAAGCCTCAGCAACGTGCCACCTGCTGCCTTGAAGCTTGCCGCAAGCAACTGTCAGCTTCCCAAAGCCAACGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101579:ENSDART00000158811:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.465
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(21.1=100)
A:
NA
C2:
PF067527=E_Pc_C=FE(51.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGTCTAAGACGCTGGACT
R:
GGAGCTTGTGTTGGAGTTGCT
Band lengths:
257-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]