MmuINT0058033 @ mm10
Intron Retention
Gene
ENSMUSG00000024240 | Epc1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278322]
Coordinates
chr18:6439592-6440190:-
Coord C1 exon
chr18:6440049-6440190
Coord A exon
chr18:6439956-6440048
Coord C2 exon
chr18:6439592-6439955
Length
93 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CGCTTTCTTTTTCTCCCTAGGAG
3' ss Score
12.31
Exon sequences
Seq C1 exon
GGTTTTGTTTCTAAGACGTTGGACTCTGCTAGTGCACAGTTTGCTGCTTCTGCTTTGATGACGTCGGAACAGCTGCTGGGGTTCAAGGTGAAGGATGATGTGGTGCTCGGGCTCGGGGTGAATGGCGTCCTTCCTGCCTCAG
Seq A exon
GTGAGGGGTGGCATCTGCGTGCATACGTATTTGTACACATCGTGACTCAGCCACAAAATGCACAGCGCTTACACGCTTTCTTTTTCTCCCTAG
Seq C2 exon
GAGTATACAAGGGCTTACACCTCAGTAGCACTACACCAACGGCACTTGTACATACGAGTCCTTCGACAGCAGGTTCAACTTTGTTACAGCCTTCAAATATTACACAGACTTCGGGTTCCCACAGCTCACTGAGTCACCAAGTAACTGCTGCCAGCTCTGCAACAACTCAGGTTCTGTTTGGGAACAACATCCGATTAACTGTCCCCTCATCTGTCCCCACTGTCAACTCTGTCACCCCAATAAACGCACGGCATATACCTAGGACTTTAAGTGCTGTTCCGCCATCTGCCTTAAAGCTGGCTGCTGCAGCAAATTGTCAAGTTTCCAAGGTCCCCTCCTCATCCTCTGTAGATTCAGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024240:ENSMUST00000115870:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.468
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(20.2=100)
A:
NA
C2:
PF067527=E_Pc_C=PD(62.2=98.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTTGGACTCTGCTAGTGC
R:
ACAAGTGCCGTTGGTGTAGTG
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types