RnoINT0055451 @ rn6
Intron Retention
Gene
ENSRNOG00000014834 | Epc1
Description
enhancer of polycomb homolog 1 [Source:RGD Symbol;Acc:2324280]
Coordinates
chr17:57307714-57308320:-
Coord C1 exon
chr17:57308179-57308320
Coord A exon
chr17:57308078-57308178
Coord C2 exon
chr17:57307714-57308077
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGCTTTCTTCCTCTCCCTAGGAG
3' ss Score
12.33
Exon sequences
Seq C1 exon
GGTTTTGTTTCTAAGACGTTGGATTCTGCCAGTGCACAGTTCGCTGCTTCTGCTTTAATGACGTCAGAACAGCTGATGGGATTCAAGATGAAGGATGATGTGGTGCTTGGGATTGGGGTGAATGGCGTCCTTCCCGCCTCAG
Seq A exon
GTGAGGAGAAAGACCCAGTTATATTCACATGCATACATGTTTGTACACATTGTGATTTAGCCGCAGAGTGCAGTGTTTACATGCTTTCTTCCTCTCCCTAG
Seq C2 exon
GAGTATACAAGGGCTTGCACCTCAGCAGCACTACACCAACGGCGCTTGTACATACGAGTCCTTCGACCGCAGGTTCAACCTTGTTACAGCCTTCAAATATTACACAGACTTCGGGTTCCCACAGCGCACTGAGTCACCAAGTAACTGCTGCCAACTCTGCAACAACTCAGGTTCTGTTTGGGAACAACATCCGATTAACTGTCCCCTCATCTGTCCCCACTGTCAACTCTATCGCCCCAATAAACGCACGGCATATACCTAGGACTTTAAGTGCTGTTCCGCCATCTGCCTTAAAGCTGGCTGCTGCAGCAAACTGTCAAGTTTCCAAGGTCCCCTCCTCATCCTCTGTAGATTCAGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014834:ENSRNOT00000019968:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.418
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(20.3=100)
A:
NA
C2:
PF067527=E_Pc_C=FE(52.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTTGGGATTGGGGTGAAT
R:
GGGACAGATGAGGGGACAGTT
Band lengths:
257-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]