HsaINT0056884 @ hg38
Intron Retention
Gene
ENSG00000120616 | EPC1
Description
enhancer of polycomb homolog 1 [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr10:32271554-32272167:-
Coord C1 exon
chr10:32272026-32272167
Coord A exon
chr10:32271918-32272025
Coord C2 exon
chr10:32271554-32271917
Length
108 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTCTTTCTTTTTCTCTCTAGGAG
3' ss Score
12.57
Exon sequences
Seq C1 exon
GGTTTTGTTTCTAAGACTTTGGATTCTGCTAGTGCACAGTTTGCTGCTTCTGCTTTGGTGACATCAGAACAACTGATGGGATTCAAGATGAAGGATGATGTGGTGCTTGGAATCGGGGTGAATGGCGTCCTTCCAGCCTCAG
Seq A exon
GTAAGAATAAAGACATTTAAATTGTTTGGGTTATATTTATAACATATATCTATAATATAAACAGCAAAGTTGTACATTGTTTAGATGTTTCTTTCTTTTTCTCTCTAG
Seq C2 exon
GAGTATACAAGGGCTTACACCTCAGTAGTACTACACCAACAGCACTTGTACATACAAGTCCATCAACGGCAGGTTCAGCTTTGTTACAGCCTTCAAATATTACACAGACTTCAAGTTCCCACAGTGCACTGAGTCATCAAGTAACTGCTGCCAATTCTGCAACAACTCAGGTTCTGATTGGGAACAACATTCGATTAACTGTACCTTCATCAGTTGCCACTGTAAACTCTATTGCCCCAATAAATGCACGACATATACCTAGGACTTTAAGTGCTGTTCCATCATCTGCCTTAAAGCTGGCCGCTGCAGCAAACTGTCAAGTTTCCAAGGTCCCATCTTCATCCTCTGTAGATTCAGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120616:ENST00000375110:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(18.4=100)
A:
NA
C2:
PF067527=E_Pc_C=FE(47.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCTGCTTCTGCTTTGGT
R:
GATGACTCAGTGCACTGTGGG
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development