GgaINT0101663 @ galGal3
Intron Retention
Gene
ENSGALG00000007169 | EPC1
Description
NA
Coordinates
chr2:14082294-14082947:+
Coord C1 exon
chr2:14082294-14082435
Coord A exon
chr2:14082436-14082580
Coord C2 exon
chr2:14082581-14082947
Length
145 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
GCTTTGTTTCTCTTTGGCAGGAG
3' ss Score
8.4
Exon sequences
Seq C1 exon
GGTTTTGTTTCCAAGACACTGGATTCTGTTAGTGCTCAATTCGCTGCTTCAGCTTTGGTTACATCAGAACAATTGATGGGATTCAAAATGAAGGATGATGTGGTGCTTGGAATTGGGGTGAATGGCATTCTTCAAGCCTCAG
Seq A exon
GTACGGAGCTGTTGATGCATAATTCGATTGCCTTTTGGGTTTTATTATAGTTGTTCATTTTTTTTTAACTGCGGCGATAGCATTTTCTGTCTGGGGTTGAGTAACTTCTGCAAAATGGACTTACTGCTTTGTTTCTCTTTGGCAG
Seq C2 exon
GAGTATACAAGGGCTTACACCTCAGTAGTACTACACCTACAGCACTTGTCCATACAAGTTCATCATCAGCAGCGGGTTCAGCCTTGCTACAGCCTTCAAATATAACGCAGACTTCAAGTTCCCACAGTGCACTGAGTCACCAAGCATCTGCTGCCAATTCTGCAACAACTCAGGTTCTGATTGGGAACAACATCCGATTAACTGTACCCTCATCAGTTGCCACTGTAAACTCTATCACCACGCTCAATGCACGACATATACCTAGGACTTTAAGTGCTGTTCCATCATCTGCCTTAAAGCTGGCTGCAGCGACGAACTGTCAGGTGCCCAAGGTTCCAGCTTCATCCTCTGTGGATGCAGTACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169:ENSGALT00000011610:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.285
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=FE(20.2=100),PF073636=DUF1484=PD(55.0=91.7)
A:
NA
C2:
PF067527=E_Pc_C=FE(52.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTCAATTCGCTGCTTCA
R:
GACTCAGTGCACTGTGGGAAC
Band lengths:
250-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]