DreINT0063565 @ danRer10
Intron Retention
Gene
ENSDARG00000007485 | epc2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-802]
Coordinates
chr9:25540794-25542761:-
Coord C1 exon
chr9:25542472-25542761
Coord A exon
chr9:25540916-25542471
Coord C2 exon
chr9:25540794-25540915
Length
1556 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCATATCCTTGTCCATCCAGGTG
3' ss Score
9.47
Exon sequences
Seq C1 exon
GGTTGTTTTGGATCGCACCTCATCAGATCTGGATCATTCCCTCGGGCACCTGGACCCTGATATGCTTTATCCCTCCTCCGGCTCATGTGTGCCTGACCTCCCCGTCCACACAAATACAAACTCTCACGTCTCGCAACGCTCTCTGACTCAGCTTCTCGGTGACATCCAGGCCTGCAGGTGGAAGTTTTTTCGGCCTCGGCCGCTGCAGGACAACTCTAGGGCTGAGGACAAGAAAGGGACCCCGCCGGTGGAAAAAGGTGGAGGGACGACACTCTCTAACAGCGTGTCAG
Seq A exon
GTGAGGCATCTGAGCTCAAGGGCACTCACAAGGTCAATTAAAAGAATTCTGCTGAAAACAACTCTTTACCACTGTACTCCTCTATCTTTGTTTAGTTCAGGGTTTTTCAACAAATCCATCCTTTCATTTATTTTTATGTGGCCTGCCAGTTGTTTTGAAGAAATAAACTCTAGCGCTGTGTACATGATACTGACAAGAGTTCAGAAATTCTCAGTGGTTGTCAGTTTATGGATTGCATTCTATATGCTGAACACAATGCTTTGTTGTTGTTGATAATTTAGCTACATTGCTTTGATACATTTGAACAGGCTTCTTTTAGGTGCACACATTAAATTGTGCTCTATCCTGTCAGATGTATGCGTACCTGACTCCTAAGTTTTCAGAGAAAGACATGAGCTGTAGCAATTTAGCAGCTTGTGCACAATACCATTATGGCTCATTATTGTTTTTGGGTTATAATTCTTGCTTAAAGTAAAAGTATTGGATTGTAGTAATACATCTGGTGGAAAAAAAAGATACTGAGTTGTGAAAGCCTGGTTTGTTCACTTTTTTTTTTATGTGGCTTTAGACTTTTTTCTTGGTTGCTGCATGGAGAGCACTATATCGACCAGCGTCCTCCAGTAGGATGCTTTGAACTTCCTTTTACAGCGTTTCTCAGCTGATAATTCAAGATCTGAAAATGTTTCCCAGTACGGTTTTGAGTGGGTTACGGAGTGTTTTTGTGTTGCACAACTTTTATTTTGAAAGATGTGTGCTAAAGCCGTTATGCCTCTGTCAGATGCTGTTCAAGCGAGAGTGAAGGACACTCTCCTAATTCAGTGTCTGCCTTCAGATTAGATGCTGAAATACAGCGTCAGTGTTCCCAACCTGTCAGCTGTTATACTGTACTCGTGTGTTAAACGTTTTAGTGAATAACATTTGTTTGGGTTGGTCGTATATTTAAAAAAATGTGTAAAAAATCACTTTAGCAATGATGATGCTCTATTTAAATGGCACACATGCTGTATGACGATGAAGGTTGTTGCAGTATTAGTTCAAAGCCGTTAAAAGCAAGTAAAATAGATAAACTATCATTTCAAAGCTCTCCAAATGTGACTCTTTATATGCATCAAGCTGCCGACCGGAAGTTCGAAGCATCCTCCTTAGGCATATACGCAAAGCATAATAGGTCATTTTGCATTCTATGAAGTAGGTCTATATTAATTTCTTTTTATAAATGTTAAAGACATTCATGCCGTTTAATTTGGTTTGTGAAACCCATATTTTTTGTCAGGGTTCTAATTAGCTTTAAAAAAACACAAAAATAAAAATTTACACAAAAAATACATTAAAAAACAAATTGAAACGGAAATATTATATTAACAATTTGCGTTTTATCAGCTTATTCTCTTTTTACAATGTTAATATTTACAAAAAACATACAAACTACCCAAAATGAATTCTCTTGTTTAATTTCCTGAGTAAATGGCTTTATTGCCACCTAGTGGTGAAAATTAAAATGAGTTCCTTCTCATCCACAGAATATAACATTTCTCCCCATATCCTTGTCCATCCAG
Seq C2 exon
GTGGATTCACAGAAGAGCAGTTTCAGTCCCATCAGCAGCAGCTGGTTCACATGCACAAACAGTTACAGCAGCAAGAACTGCAGCAGAACTCCACAGCAGCAGAAGCTCACTTACACCTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007485:ENSDART00000021672:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF067527=E_Pc_C=PU(20.1=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGATCATTCCCTCGGGC
R:
GTGGAGTTCTGCTGCAGTTCT
Band lengths:
358-1914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]