DreINT0063570 @ danRer10
Intron Retention
Gene
ENSDARG00000007485 | epc2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-802]
Coordinates
chr9:25548049-25549494:-
Coord C1 exon
chr9:25549349-25549494
Coord A exon
chr9:25548256-25549348
Coord C2 exon
chr9:25548049-25548255
Length
1093 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCTCAATAATTGTTTTGTAGTTG
3' ss Score
5.02
Exon sequences
Seq C1 exon
CTCTTGGTTTGGATAACGAGCTACCCGACTATGACATGGACTCAGAGGACGAGACTTTACTAAACAGACTCAACCGTAAGATGGAGCTAAAACCTGTGCAGTTTGAGACCATGATGGACCGGTTGGAGAAAGCCAGTACCAACCAG
Seq A exon
GTAACAGCAACTGCATTGAAGACCCAAGTTGTGTTCTTGAGTTGTGCAAAGTTAATGTAATATCATAAAAGCATCAAAATAAATATTACTGTACACTGTCATTTAAAAATTTGGGTTTTTAAAGATGTCTTAATTTTGTCTTTAAGATGTCTTAAAGTGTTGTGATGATCAAATTTAATTAATTAATTTATTAATACCAATACCAGTGTTTTATTTTAATATATTTAATTTCTATGATCGCATGACTGATTTGTTTACATTGCATTTGAGTTATTACAATATTATTTTTTAATTTTGACAATTTGAATTTAATATATTAATTAAAAAAAATTTAGCTCTGGATTTATTTATTAATTTTTAAATGTTCATGGCTTGCCAGTTGGTACTCTAATCTCATCAATTCACTCTACCCATTGTATTGTGCTTTAATGTTTAGATACGCACAGACTTTTTGTTGCTATTTTACAATTACATATATTAACATTAAAATAAGAAAACAACAATAATGTGTGGTTATAAATTTAGTAATTGATTGATAAAATGTGTGGGGAAATAAATTGAAAATGATTTACTCAAGGAATTGTGGGACAAGCAAATACTTGCACTTATAAAAATAATAATATTAATAATAATAATAATGCTAATAAAAATAATAATGGTTATATTAAAAGAACGTAATTTATATTAAATATAATGTAACAATACATACATGTGCATTTTTTTTAACAAGTGTTTGGCGTTTATCTTAAAACACAATATGGTTAAAATTGAATAATTTTTCCTAATGCAAATAATAGTATATTTTGTCCTAGTTGGACATGGGGAAAAAGTAAAATACTTTTATATTTTTTTAATTAAAAATATAGATATATTTTTATTGAAAAAGATAAGCCTTTATAGTTAGTTATTCAAACTATGTGAAATTATGTAGCTTAGCTATTTTTGTTATTATTATGTTTTTTTCCCACCTAACCATATTATACAAGTCCCCTTTTTGGTGTGAAAAACATTTACAAACAATGTAAAATGCACCTTCTAGCATGTAACTTTTTTCTCTCACCTTTCTCTGTATCTCTCAATAATTGTTTTGTAG
Seq C2 exon
TTGGTCACTCTTCAAGAGGCCAAGCTGCTGCTAAATGAAGATGACTACCTGTTGAAGTCTGTGTATGACTACTGGGTGAGGAAGAGGAAGAACTGCCGGGGGCCGTCTCTTATCCCACAAATCAAGCAGGAGAAGAGGGATGGTTCCACCAACAGTGATGCTTACGTGGCCTTCAGGCGTCGCACAGAGAAGATGCAGACTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007485:ENSDART00000021672:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.391
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(30.6=89.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGGATAACGAGCTACCCG
R:
AGTCTGCATCTTCTCTGTGCG
Band lengths:
342-1435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]