GgaINT0050581 @ galGal3
Intron Retention
Gene
ENSGALG00000012453 | EPC2
Description
NA
Coordinates
chr7:36374142-36376726:+
Coord C1 exon
chr7:36374142-36374287
Coord A exon
chr7:36374288-36376519
Coord C2 exon
chr7:36376520-36376726
Length
2232 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
CTTCACATTTTCTCTTTCAGCTC
3' ss Score
11.23
Exon sequences
Seq C1 exon
CCTTTAATCTGGACAATGAACAGCCAGATTATGATATGGACTCTGAGGATGAAACCTTATTGAACAGACTAAATCGGAAGATGGAAATCAAGCCACTGCAGTTTGAAATAATGATTGACAGACTTGAAAAAGCCAGTTCTAGTCAG
Seq A exon
GTATTTTGCTATGTTAAGAAATGGCTAAAGTATTCTCATCTGTGAGTTTTCTGGCTGAGTAGTTCTCATTTGTTTTTCAATTTTATTTATTTGCTGCTAACTGGAGAAGTATGCTTGTGTGACTGCAGGCATACAGCAATTGCACTGCTGTCACAGTATTGGTAGCAGGAAAATAGGGGGAGGGAGTGTGGGCAGGTGGGTGGTGTGTGGTGGTGAAAACCATAGGAGGTGGTTTTAAATTCTAATTCCCATCCATGATATTTTAGAAGGGGACAACTGAAAGTATCTTTCACCTTTACTGGCATTAAAGAAGCTGACAGTGGTTAATAGGTGTACAGATCTGATCATATCAGAATCCAAATCTTTTTGTTTTGCTTGGCACAGTGGGCATTGTCTTCAGTTTGGAGGTTAGAAGCACGGACAGTGAAGCAAAGCCTTTGCTGAGATTGGACCCTTGTGATATAAACTGCAGTGATGTAAGAAAGGAAGCTATGCTCTAGGAGCAAGCGTGAACTGCCAATTACTTTATCACAAGGGTGCTTATATTTTAGTAGTTAAGTTCTTGAGGTGTTCCAGGAGACCACTGTCTGGAGAAGGGTCTTTAAAGCCAAAACATGGCTCAAAAACTACATGAGAAGGACCAGGTTCTGACAGGTAAGCTTGAAACAATAAGTTATTTCTCAGCAAGATGGGCATTATGTGGGAGTGAAGCATCTACTTGCAGGATCTGTAGCTCTGCCACGGTTGCTTAACCTGATGTAGTTTGGGGTTACACTGTAAGAGGCAAGATCTTGTGTTCTCTGCCTCTTTTGGAGAGCTCAGTGAGGGTTGGATAAAGAGATGTTACTATGTGAGGAAGATGGGATGTAAAGAAAAAATTGTCAAATCCATTAAATGATGCTTGTTGAGTACGTGGCACTTGGATCTTCTAGAGCTTTGCTGTTGGTACCTCTGTCCTGGCTTTCGGTTAAAGCAGCTGGTTACACTTCTCATGTTTTCTCCTTATGTTGCTTTCATTATTGATTACTTGAGTAATGAAATTAAATTCAAGAACCGGAAGACTGGTTTGATTAACCAGGCTGGTGTATTCTCATTAGGACAGATGCAGGATTGCTGTAACACTGCATGTTGTCATCAAGTACAGGGGATTAGGAACCTTCTTTTCCCTCTCCCTCCTCCATAAGCAGGTCCATTTTTTTCTTAGATCTCTTTCTGCTATAGGTTGGGTTTTGTTTTATTCTGGCTGCAACTACTGTTTCCATAGGAGCAGTGGTTAGACTTAGGATGTCCTTATTTTTCTTAAATGTATTGTTTCTTTTTCTGATGATCCTAATGTAGAGACAAGGTTTAACATAGTTTGAAATATTGTTTGCAAAACTGCAAGTTTAAATTCAAGCTTTTTTTTTTGATATTTTTCAAACTACGGTGAAGAAGTTCTGTCAGGCTTCTGTTTTAAGTAATAATAGAGATATTTTCTATTATTTATTAAAAGGTTTAAGATCTGAACATGCTAAACTCATGTTGGTTACTCAGTGATGACTTTTACATTTACGTGGTGTGATTTCAGTATAGAAGTATAACATAGGACAAGAATGTAATTATTTAATTACCTGTGTTTTAACTGCCTCCCACTGAAATAACTTGTGTAAGAAATGAATGTCTGTGTATCCCTGGGCTGTGATAAATACGAAAGGTCATTGTCCTTTTCTATCACAAAGTAAACATTTTTTGGGGGAAGGATATAGTAGTAATTTGCTTTGGAACATATTTTGATGTCACTGAAGGGTTCTTAATTGTATACAGCATCAAACTGCAAGCAATCAGATGTTAATAATCTCTCACCAGTAAGAATTCTCCTCTTTATTGAGGGGAACGAAAAAAAAGTCAGTAACTAGTCTGCAGATCATGATTTGATAGTAAGTCATTTAAGCCCTGTGCTTGTAATGGTATCAACAGTGTTTTAGTCTTTCGTGAAGAGCGGGTGAAGTTGCAGACTTACATAAAGGGTTCTGAGAGCTGATCGTACTGATCCAGAAGGATCAGGAACTGTTTGTTTAAGTCAGGACGATCAGCTGGTGGCTTAAGTATTTGGATTTAGATGAATACTCCTTTCTCCCTTGTGCTAGAAAAGGATCAAGTTTATTTACGAAGTGTGCAAGGCATTTGAATGTGCAGTGACTTTCTCCTTGCTTTACCCCATCTCAACTGCCCCCTTCACATTTTCTCTTTCAG
Seq C2 exon
CTCGTTACACTTCAGGAAGCTAAATTGCTGCTAAATGAGGATGACTACCTTATTAAGGCTGTATATGACTACTGGGTAAGAAAGCGTAAGAATTGCAGAGGGCCGTCTCTCATCCCCCAAATCAAACAGGAAAAGAGGGATGGCTCCACCAACAACGACCCTTATGTTGCCTTTCGGAGGAGAACTGAGAAGATGCAGACAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012453:ENSGALT00000020355:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.493
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(30.6=89.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]