DreINT0074714 @ danRer10
Intron Retention
Gene
ENSDARG00000000588 | grasp
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:ZFIN;Acc:ZDB-GENE-060312-30]
Coordinates
chr23:32276852-32278860:-
Coord C1 exon
chr23:32278794-32278860
Coord A exon
chr23:32276919-32278793
Coord C2 exon
chr23:32276852-32276918
Length
1875 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTTTTAATTTCCTCTCCAGCAA
3' ss Score
8.73
Exon sequences
Seq C1 exon
GCTAGAAACCGTCTACAGCGACTCTATAAGAAAAGCAGAACTGGAAGCTCGTCTGCAGTATCTAAAG
Seq A exon
GTGAGTCTCTTTAACCATGTGTAAAGCGACATGCACATATCGAGCATTTACAAGTGTTGTAACGTAAGGCGAGCATGTTAACACAGCTGCCCCGCTCTGGCACAGAAACACTAGGGGCGATCACACCTGTTTCCCCTCACGCTACACCTGTCCCCTCTTAATCCTTACATACCACATACAGTACAGCTGACACAAGGAGAAAAACACATTTTTACACTCCTCACCATAATCTGCGAAGTGAACGACGATGCCTGGGCTGTCAAATTAAAATTTTAAATGTATTTTTTATTTTTGAAAGTTAAAAGATCTGGGTAAAAAATTACAAAGTTGTAGACTTTAAAAAGTGATTAGTTATTTTACTGAAAAAATGTGAGTAAATACATTGCTTTAAATGTGAAATGTTGACTTTACTTTAAAAAAAAAAAAACTGTATCTTGGAATGGGTAAATTCACTTAACTTAAAGGAATAAAAAGTTAAATAATTTTTTTATTGGTTATGCTGATTTCTGGGTCTGGCAGGAACACTTTCAGCTTAGCTTAGCATAGATCATTGAATTAGATTAGACCGTTAGCATCTCGGCACCAGTGGTGTAGTGGTTAGTGCGTCGACCCATGCACTCCGGTGATCACGGCGACCTGAGTTCAATTCCTGCCTCGCAGTTCTATGCTGATCCTTTCCCACTCTCTGCTCCCCATGCTTTCCTGTCAATACTCTACACTTTCCCACCCATTAAAGGTGAAAACCCCAAAACAATAATTATAAAAAAAATGAGTTCAAAGAATATCAAAGAGTTTTTCTATTTTCCTATTTAAGCTTTACTCTCCTGTAGTTACATCATGTACTGATACAGATGAAAAGTCGCTATTTCCTAGGCCGATATGTCTAGAAACTATACTCTCCCATTAAAAGTGCCATGTTTTGACACAATGTTTTGCTTTTGTTGTGGATAAACAAGAAGTTATTTGAATAAAACTAAACATTAATTGTTGACAACAAGTGGACACAGGAATGTTAAAAATCTACCAATTTAATAAAGTTTTTAGAAAATATAGTGGTGCCATATCAGCTATAAGATGTCATTTATATGACATTTTTAGCTTGAATGGTAATTGCATTTTTAATTAATGATATTTAATTAAAATTCATTTTTGTTGTTGTTTAAAGTATTACAAAGAAGTTTTGATTATTACATTTAAACTGTAAAACAATTATAAACATTTAATGGAAAATACAAAGATTAAAAATAAAAGCCTAAAATTCTTTTATTTCAAAATGAAATAAAATATATGGAAAGGAAGGAAATAAAAACGACAACCAAATGTTAATGTAGAAATAAAGAATGTAAAAAAAGTACATTTATTCAAAATATGAAAAAATGTTATAATAAGGTTTAAAAACCAAAGTAAAAAATATCATTTTAAAAAGTGAAATACCATAGCAATTTCTCTAAAATTATTATTTTTTCACTAAATTTCATTAGAAATACTGTTGATTTATGTCCGCGTGTTATTCAGTACAATATTATGCATCAAGTTTTATTATTAGGCAAAAAACATCTACATTCTGTTATAAAAAAAGTAAATATTGGTGTATATCTGGAAAAGTCCTTATAATATTATAATAATTGCTTAATTATAGGTTTATTTGTTTATTATTATTAATTAACATTATTAAAATAAATAGAAAAGTTAGTTGTCTTTATTTTTTATAAAAATAAATGTAAGGGCAACCAAAAAGCGTGAGCTGAGTTTGACAAGAGAAGTAGCGATAGAGAACTGAGAGTGAAGTCTGACCACACACTTCCCTGTTCTCTATGATGATGATGAGCAGCCGAATAACGCATCTAATATCTTTTTTTTTAATTTCCTCTCCAG
Seq C2 exon
CAAACCCTGCATGAGAAATGGGATGAGTACAGGTCTCTGATGGTACAAGAGCAGCGGCTCGTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000588:ENSDART00000103343:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.6=17.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]