HsaINT0072115 @ hg19
Intron Retention
Gene
ENSG00000161835 | GRASP
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:HGNC Symbol;Acc:18707]
Coordinates
chr12:52407661-52407985:+
Coord C1 exon
chr12:52407661-52407727
Coord A exon
chr12:52407728-52407918
Coord C2 exon
chr12:52407919-52407985
Length
191 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
GTGGGGACTGTCTCTTGCAGCAA
3' ss Score
7.07
Exon sequences
Seq C1 exon
ACTGGAAACTCTATATGGGACATCAATTCGGAAGGCAGAACTGGAGGCTCGTCTGCAGTACCTGAAG
Seq A exon
GTAGGGGAACCTAGATAACGTCCAGCCTCCACCCTCCTCTTCCCAAGCCTCTGCCCTGTGGGGGGTCACTTACAGCTGAATCTCCTGTAACTGAAGATTTCTTTTGTCTACTCCCTGATCCCTCGTCTGTACCCACGTCCTGCTAGTTTCCTGCTAGCTTGTGACAGTGGGGTGGGGACTGTCTCTTGCAG
Seq C2 exon
CAAACCCTGTATGAGAAGTGGGGAGAGTACAGGTCCCTAATGGTGCAGGAGCAGCGGCTGGTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161835-GRASP:NM_181711:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(10.5=17.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACATCAATTCGGAAGGC
R:
CTGCTCCTGCACCATTAGGGA
Band lengths:
106-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)