HsaINT0072115 @ hg38
Intron Retention
Gene
ENSG00000161835 | GRASP
Description
general receptor for phosphoinositides 1 associated scaffold protein [Source:HGNC Symbol;Acc:HGNC:18707]
Coordinates
chr12:52013877-52014201:+
Coord C1 exon
chr12:52013877-52013943
Coord A exon
chr12:52013944-52014134
Coord C2 exon
chr12:52014135-52014201
Length
191 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
GTGGGGACTGTCTCTTGCAGCAA
3' ss Score
7.07
Exon sequences
Seq C1 exon
ACTGGAAACTCTATATGGGACATCAATTCGGAAGGCAGAACTGGAGGCTCGTCTGCAGTACCTGAAG
Seq A exon
GTAGGGGAACCTAGATAACGTCCAGCCTCCACCCTCCTCTTCCCAAGCCTCTGCCCTGTGGGGGGTCACTTACAGCTGAATCTCCTGTAACTGAAGATTTCTTTTGTCTACTCCCTGATCCCTCGTCTGTACCCACGTCCTGCTAGTTTCCTGCTAGCTTGTGACAGTGGGGTGGGGACTGTCTCTTGCAG
Seq C2 exon
CAAACCCTGTATGAGAAGTGGGGAGAGTACAGGTCCCTAATGGTGCAGGAGCAGCGGCTGGTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161835:ENST00000293662:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(10.5=17.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACATCAATTCGGAAGGC
R:
CTGCTCCTGCACCATTAGGGA
Band lengths:
106-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development