RnoINT0067293 @ rn6
Intron Retention
Gene
ENSRNOG00000007346 | Grasp
Description
general receptor for phosphoinositides 1 associated scaffold protein [Source:RGD Symbol;Acc:70554]
Coordinates
chr7:142875913-142876240:+
Coord C1 exon
chr7:142875913-142875979
Coord A exon
chr7:142875980-142876173
Coord C2 exon
chr7:142876174-142876240
Length
194 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
TGGCTGCATGTGTCTTACAGCAA
3' ss Score
7.51
Exon sequences
Seq C1 exon
ACTGGAAACCCTGTATGGGACGTCCATTCGGAAGGCAGAACTGGAGGCACGACTGCAGTACCTTAAG
Seq A exon
GTGGGGACCAAGAAAGTCCAGAATCTGCCTTCCTCTTCCTGGTCCCTGCCCCTCAGGCCCTTTTAAGGGTTCCTGCACCTTTCTTAACCTCTGTTAGCCCTGGGGCCTTTGTTCCTTTCTCCCTTTCCCATGTTTGTCTCCATATCCTGCTGGTGACCCGGTAGTCCTGACAGTTGGCTGCATGTGTCTTACAG
Seq C2 exon
CAAACCCTGTATGAGAAGTGGGGCGAATACAGGTCGCTTATGGTACAGGAGCAGCGGCTAGTGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007346:ENSRNOT00000009979:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.6=17.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACGTCCATTCGGAAGG
R:
GCTGCTCCTGTACCATAAGCG
Band lengths:
107-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]