MmuINT0073613 @ mm9
Intron Retention
Gene
ENSMUSG00000000531 | Grasp
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:MGI Symbol;Acc:MGI:1860303]
Coordinates
chr15:101061156-101061482:+
Coord C1 exon
chr15:101061156-101061222
Coord A exon
chr15:101061223-101061415
Coord C2 exon
chr15:101061416-101061482
Length
193 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
GGCTTGCATGTGTCTTACAGCAA
3' ss Score
6.5
Exon sequences
Seq C1 exon
GCTGGAAACTCTGTACGGGACGTCCATTCGGAAGGCAGAACTGGAGGCGCGCCTGCAGTACCTTAAG
Seq A exon
GTGGGGATCAAGAAAGTATGGGCTCTGCCTTCCTCTTTCCGGTCCCTGCTCCTCCGGCCCTTTTAAGGATTCCGGCATCTTTCTTAAACTCTGTTAGCCCCGAGGCTTCTGTGCCTTTCTCCCTTTCCCATGCGTCCCCATATCCTGCTGGGGACCTGGTAGTCCTGACAGTTGGCTTGCATGTGTCTTACAG
Seq C2 exon
CAAACCCTGTACGAGAAGTGGGGAGAATACAGGTCACTTATGGTACAGGAGCAGCGGCTAGTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000531-Grasp:NM_019518:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(4.6=17.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAACTCTGTACGGGAC
R:
CCGCTGCTCCTGTACCATAAG
Band lengths:
124-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: