DreINT0075670 @ danRer10
Intron Retention
Gene
ENSDARG00000020642 | gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050417-8]
Coordinates
chr9:26098134-26101098:+
Coord C1 exon
chr9:26098134-26098225
Coord A exon
chr9:26098226-26100798
Coord C2 exon
chr9:26100799-26101098
Length
2573 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
CTCTCTCTTTTTTTTCCTAGGTG
3' ss Score
11.99
Exon sequences
Seq C1 exon
CAACATATCTGTATTCAACACCTGAACAGCTGTGCAAAAGACTACAGGAATTCTGCAAGCGTCCGCAATTAGCCAGACAACATGTTGTTCAG
Seq A exon
GTAAACAGTGCTCATTTTCCTGGAAATCAAATTGACTACAAAGACTTGGTTCTGGAATTGTGCATGAATACATTTTCATCAAGGCAAATACGTGCCAGTAAACATGATCAGTAATCAGTGCAAGTTAAACCTCTTACTGGAATCAGAGACTGTGTTTGCACCTGTTGTCGAAATGCATTGTCAGTTATTTAGTCAGTAGGGACACTTTACCTTTTCCAGTCGGTATTCAACTAGATAGTTTACTGTATACCCTCTGTAGAATCACACAAAATGACACACACATTTTTAATACTAGAAGATCCTTTCACGTGTTCAAAAGCACATTGGTTCTATTTGATTTTGTTGGCTTTAATTCTGTGAGGATTGTTTTTGTATTCACCTTAAAGATGCTGTATGTAAGTTTTTGACTCTTCTAAAGCATGAAAATATATTATGTTTGCAGATATTTAGGAAACATGCCATGTGAACACTTGTTTATCTGGAAAACAATGCTGAAGTTTATTGTGGCATTCAAACTCACATTGTTAGCATTTAACTCTGCAAATAGTACAGGTTAACTTGAGGTGATAACTGTCATAGTTTTCTGTTGTTCACCTGTGAGAAATAGAAGCCATTTCTAATATATCAATTCGAGGTTGTGTGTTAGGACAAAAACTCCTTTTAATATGGAAAATATTTCTCCTATTGGCTGCTGTTGCTTTTGTTTAGAACAAAGTTTAAAATTCCTTGCTCTTGTAATAATATCTTACTCCAGTTTACATTTTCTCACCATGAAAATAGCCATAGAAGCTGCCATTATGAAACAAACAAACAGTTGGTATTAACAGTACTATTGAAATGTATTTTAAACTAAAATAACAAATACATTAATTTTAAGTGTATCAAAATAAACTACAAAATACAGCAGGCATAAATGTATCAAAATAAAACACTGTGTTTTTGTATTTAAAAAATACTACTAAATACTTTTAAAATGTGACATGAAATTTCTTTGCAAACCTTCCATCAATAATCCTATTGGATCAATCCCTTCACCATTCAACTGACTTAGTAAAGTAAACAACTTTTGCAGATTTCTCTGCCACTTCGTTCACCTAGGGGAAAGTTGTGACCTAGTGGTTAGTGAGTTAAATTTGTAACCCAAAGGTAACTTGTGTTTCTCTTTGAGTTACAAATTACAATCTTACAGTCTATCGTTTGTACAGTATACTCATTCTCCCAAGATTTTTGTCAGTTTTTGTCTGGAAGAGTCTCTGTTTACCCTCTTAAAAACTATATTAACCATTGTTTACCATATTTACATTCCTCTGTATTTGCACCTGTGGCACCGAGACACCCAAGCTTGGGAAAATAAGGGGGAAAGAACCAATCAGAGGCCTTATTTTTTAGATGTCATCATGTACTGTAGACTTCTTACTAAATATTTTACAGTATTTTAAAAATACCAAAATACAAAACACTAAATTATTTTGATACAAAATATTAAGCCAGTTTCATAAACCCTATCAAGTACAGATTACAAAATACCATTTTGTATTTGAAATATGTATTTCAATATGCTGGCAGCTAGCTCTCTGCAACTCTCACATGGTCACCCACTGAAGCTAAGCAGGTCTGCTCCCAGTCAGTACCTGATTGGGAGACCACATGGAAAGATTAGGTTGCTGCTGGAAGTGGTGTTAGTGAGGACAGCATGGGGTTCTCGACCTGCTGTCTGTGTGGGTCCTAATGCCCAGTATATTGATGGGGACTCTATACTACTCAGTGAACGCCATCTTTCAGATGAGATGAGGCTCCTCACTTTCTGTGGTTTTTAAAAATCCCAGGAAATCCTTCGAAAACCTCGGCCTCCTGGCCAAATTGTCCTCTGGCCTCTGCCCATCATCATCAACATTTGACCACTTGAGCCTCTACTAATCCAAAGCTTACTGAATATTTTTTTTTTGTTTTGAACCCTTTTTACATCTTTATTTAGCATTGTCCATTTGTGGGCAGATTGATGATAATGCATTTTAATGCCAGTTGTAAACAGGGCTAGACGTTCTTTAAAGTTGTGTAACAAATAAGTTCAAGCTTTTTATCGAAAGCTCTAATCTGGTAGTTTGTAGTTCAGTTCTAAAAATTCTGGAAAAGTTAAGAAAGCTAAGCAATTCTTGCATTCTAAAAAAAATAATAAAACAATAAAAAAAATAGAGTCGTCTGTTTACTATATATATTTGCATTGGGTCAAAATTGTGTAGTTTAAAGAAAACGCAAATAGCACGCAAGTAAGTCGCAGTGCTGAATAAGTTACATTTTACAACTCAGAAATAAAATGGAGGATAGAAGAAGTAATAATAAAAACATACATTTAAATGTTTGATTTAAAGTTGTGGTACTGAGTTCTCATTTGAAGTCTCATGCAACATTATAAAAGTATTAAAATCTGTACCCTGAAGCGAAGCCATTTGAGAACCACTGCTTAACTAATCATAAAACAATGGGATTCCCATTCTGTCATAACACTTTCACTGTTCTCTGCTTTTCCCATCTCCTTCCCTTTATTCTCTATGTCTCTCTCTTTTTTTTCCTAG
Seq C2 exon
GTGAGCCTGAGCTCTTTCTCCTGGGACTCTCTGGGGGACAATTTCAGATCTCTTCTTAAGGCAGACAGTGGCAGGATGTTCACAGATAAGCACATGGCATAGCGTGACCCCTAACGCATACTGTACATTATAATTCAAAACATATGACCCCTTACACCTACCTCTCTGCTGTTTTTTTAAGGAACAGAATGTATATGTGATTTTAATGTACTCACACAACAGAAAAAAACAACTTTATATGTGTGCTTAATGTGGGAGAAAAAAGAACAAAGTAAAAATAAACAATCAAAAAACCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020642:ENSDART00000024572:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=PD(18.7=93.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]