MmuINT0074706 @ mm9
Intron Retention
Gene
ENSMUSG00000036890 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2444269]
Coordinates
chr2:44419942-44426030:-
Coord C1 exon
chr2:44425939-44426030
Coord A exon
chr2:44421055-44425938
Coord C2 exon
chr2:44419942-44421054
Length
4884 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
3' ss Seq
CTTCCTCCCCCTTGTTACAGGGT
3' ss Score
11.26
Exon sequences
Seq C1 exon
CTGAGTATCTGTATTCCACACCTGAACAGCTTTCAAAACGGCTCAAGAGTTTCTGCAAGAGGCCAGATATTATAAGAAAACATCTTTATAAG
Seq A exon
GTAGCTATTGAGAAGAAATTTACGTGCTAGAAATGCCACATTTAAGTACAAAGAAAATTTAAAAAAAAAACATCTAATTAACATACTAATGTTTAAAGGAAACATGCTAGGGAGGGGTGTTGGTTGTTACACTAACAAGGATTAATTAAACTGCATGCCAGTTGTATTAACCTAGGTCTTAGGAAATACGTGCACTCCATGCACACTACATGCTTGCTTTTTAATTTATTGTTTTCTAAGATGACTGTCCTGTACATTTAGCCTCAAGAGGCTTATAAAAATGAACCTGGATTAATGTAACTCATTAGTTTAAAAGGAAGTGAAGGGAAGACTCCACAATTATACTAATAAGAATAAGCCTTTCTTCCCATCATAATGAAATCTTAAGGCCTCAAAAATTTAGCTGAATGACATTAGTGAAGTTTGTTGTTGGTTTTTGAACTGCTTTAAAGGCACCTTTCAAAAGTTGTATTCCCCTCATTCTGGTTAAAATGAGACTTAAAAATTCCATTTATTTAGAGTCAGGTCCATGGGTCTTAGCTGAAAATGTCAAGGCAAATGGTTCATATCAATAGTACCTTCAGCAGTCCCTCTCGCCTTACCTGAGTCCAGCCTCTTACACTGTGAAACAGCACAAAGAGCCCCCACAACACTGTAAGGAGCTGAAGTGGGGTCTGCTTTCTGGGTTTCAGAGGTAGCTCCAGGCCATGAATAATTCACCTTTTGATGGACTTTGACCGTAGTGTCTTCATTTTTTCTAAGGCTAATGTAGTTTACAATCTAGTTCTTTTATAATTCAGAAACTTCTAATTTCCTTTGTTAATATATAACCTTCAGCATGAAATACACTCCTGCCTTTCCCCTCTCTTGTTTCAAGGCCTAAAATACATGTTTACAGAGTGATGCATGAAAACATGACTTTATTTCTCCAGGAAACAGTTAAACTTCAGCAAAAAGGGAGAGAACCAAAAATGCAATTTAACACCCAATTTCAAGCTCATTATCTTTCATTGTCTATTAACTTGGCGATGGTTCAGAAGGTAGCTCATGATAGTTTAAAATGCTGACTGCACAGTTCCAGGCTTCAGTGTGGCTCCCGTAGTGGATACTGTTGCATCGTGCCTGTGAAGCCTCCAAAGAGTCTAGGCCCTCAAGGTTTGCCCCAGTGTGTGCTCCTTCCACAGTTCAGTCGTACTTGTGTTCTCATACAACATGCATCGGTCAATCCCAGTGGGATAGGCAGGCAGAACATGAAGATCATGAAAGTTAAGGAAACAGATGTTTTGGCCTAAGTGGATTCAAGTTATGTTTGTGCTGTGAACCTACTTCAGTAAGTTCCCAGTTAAAATACCAATTTTTTGTTATGCTTCAGGAGAATTTTTGATAAAATGTTTACAGATATGTTTTATCATCAAATGTATTTGCTTTAATGTTGGTTAGGGTCAAACCCTATTAACCCTGTTTTCCTACATCTGAGTCTTCAACTGTTTCACAAGGTCCTGCAACAGTTGTCTGTGGTTTGAAAGGAAACAGATTTCTAGCTGACCTTTTTCAATAGAATTGCCACCCTTCTGGGATATAGTGTTTATTTTACAAATAAATAGAAAAAAATCTGAAGGAATGTTAGCTTGGTGTATAATGTTAATATACAAAATTCTTCACGTACTTAAAAAATAACTCATACTTGAGCTGCACCATTTTAGCGCTGATGGGAAGCTCCAGCCTTCACATGATAAACCCCACAACTCAATGTTTCCTAAATTACTAACCTATAAGAATTTACATGTATGTTTTATGTATTCTTCAATGCATTGTAATTATAAATCTATGCTACACCTTTGTATATGGCCTCATTGATAGATATTAATGATAATTGTTATCTAAAAATTACTCTCCAAATTTAAAGAAATATATCTGAAATTACAAATAGTTGAGAGCTTTAAGACAAATGGCCCATTAAGAGGCACTAGATTAAACAATGCTAGGAATGGTCTCAAGTTTGTTGTGTTAGAGTAACATAGGTCATAGGAGTAGGAGTGAATGTAATGGAAAGATAGCGTGGATCACAGGTGTGGCTGCCTGTTCGCGTTTATTCGCAGGTAGCATCACTCTCACTGGATAAGCCAGACTCATTTCCCTGCGGGGCAGCGTCCATAGCCTACTTATCTTATGCAAGGGCAGAGCACCTTTTGTGTGCTTGTGAAAAGAATGCAAGGGCTTTTAAAAGTCTTTTCTTTTCTCCTCTTTTACTCTCCCTTCCACTGGACAGTTCTGTTTTGCTTTATAAAGCTTGTGCTGCTGAGATCCGAAAGCACAGAAGGTCACGGAATCATCAGTCTGTCCCTCTTACGGTTTACACCTTCTCTTGATAAAATCATTCGGGCTTTGTACCTTTTAGAGTTTATCTTAGAGTAGACTTTTTCATAAGGAGTCAGACTTAGAAATGTAATGACTGCGGTAAGACTATTAATATATAATTCCTTTATATGAATTAACATAACCTCATATAAGAAAATTCATATTTTCATACAAGAAAATACTAATTTTAGATACAATTATCACTAATATCTGAGAAAATATGAATTTTCTTATACAAAACATTACACATTCAATATGACTGAGAGTGTGGGGGCTGTCACTTTCAGCAGGATTTGAAGCAGACACAACTGATTCACTCTTGGTGTTCCTTTGTTTCTTAAAAAGACTTTCTGCATTAGAGCCCTATGACCTTGTCACCTGGAGGATTTTAGGCCATACCTCTATATGTATATATGTATCTATGTTTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCTCTCCCTGTCTCTGTCTCCTCCTCCTCCCTCCCCCCTCTCTCTCTTTTATACACACACATACACACAGGCATGCATGATCATTGGAAAAATCTAATACATGTAAAAAGTAAATATTTTTTTGATAATCATAAAATCTAAAGCTTTTTTATCTAAAATAATCGAAAAACCTCTTCTTAAAAAGTTTACATGTGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTCTTCCAAAGGTCCAGAGTTCAAATCCCGGCAACCCCATGGTGGCTCACAGCCATCTGTAACAAGATCTGATGCCCTCTTCTGGAGTGTCTGAAGGCAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTAAAAATAAATAAATAAATAAATTTATAAAAAAGTTTATATGTATGAATTACACACAGGTTTTGACTGAAACTTTCTTCTAACATTAAGCTGTGTCTTGCTCCAGGTAGGAAATTACACTAACCATGTACTTCCCTCACAATAAGAGCCCCTCTAGGCCACTCAGCTACTATAAACAAATTTCTAGTGCAACAGAGCAAGGTGTATTGACTTCTACAGTACCCTTACTATCGTATTGCAAATAGAACAGGAACATAATGGAGCTGGTATATAAGTTAGACATCACCTGGACTGACAGCACAGGCTTCACGTCTATCCTGTTCCTCCCTTGCTTGGATTTACAAAAATCAGTGGGATTTGAGTGTATGTGGCGTGTACATGCGCACACATGTGTCTGTGCTTATATATAAGCAAGTGTCTGTGGGTATGTCTGTATGTGTATGTTTATGGGTGTGTGTCTGTATCTGCGTGTGTCTGTGTATGTGCATGTGTCTATGAATGTGTGTCTTATGTGTGTGTATGTTTTTGTGTGTGCTTGTATATCAGGGAAAAGGAAGGCCATGTCTTTTACTTTTTAAGAGTGTCCAGGAGTTTCTTAAGGTTTTCAGAAGGTAACTGTTGATTTTTACTCTGTCCTTTTTAAGTTTTTCAACAGTTGAAACTTATAAAATCTATTATTTGAAGGAAAGAATTTTCAGATTTTTGTCTAAAACTAATTCCAAACAATGATTATGCTTACAAAGCAGACCCAGTGCCCAGAAAAGCCATTTGCAGTTGTCTTCATTCTGTCAAGCTCCAGCCATCCAAACCACAGCCATGCTGCTTCTGAGCTCCCCTCGAGAGACATTCATAGTCTAAATTCATAGTCTAAATATGGACAAGGTGTTTCCCAGCAGCGTCAGCACTGCTCTGAAATCTTACTTTTTTCTAAGAAAACGCAAAGGTCTATAGTGATATCTTAACGACGGAAAATCTCTCAGCAACACCTGGGAACTGCGATGCCAATTCTCAGTCTACAGCTCACTCTCCTTTTTCCTGTCTCCCCTACCCTTCCGTCCTCTCCCTTCTCTTCCTCTCCCCTCCTTTTTCATTCCCTTCCCTTCCCATGATTTTCTGTGGTCTGGCCCTGTTTTGGCCAGTTCTCCTTGGTTGAGATTCGTCTTTCTCCATAGGTAAGTTCTTGGCCTCATCTGCAAGTTCGTGACTCATCTGCAGATCTGGATTTTTTTTTTTCTTTCAACCATAATAGCATTTTCCCCGAGGAAGTGCTATAATGAAATAATGAATAAAACCCACTTGGAAATGTGAAGCACCTTATAAATTCCATGTACTAGTAAAGACATTTGTCTTGTGTCCTTGCTGCTTAAGAGTAGAATTCACATAGGCAAAGCTGTGTATTAAAAGTACTGTGTACCTTTTGTGTATAAAAGTTAAGACAGGTGGTAAACTTCTAAGAGCAACCATCTATGGCATGAACCAGGAAATGTATGCAGCAGAGTCCTCTCATGGTTAAAATGCAGTGACACTAAAGCAGTCGGAAGCCAGGTGTTCTTGGGGTGATGGGACTTGATGGCTTTGGGGTAAGAGTTGGAGAGATGAAGCAAGTTTGCAGCAGGAGTTTCCGCATCCTCTTGTCTCGGGGCCTGTGCTTATTCACTGCTTTCTAATCTCTTCCTCCCCCTTGTTACAG
Seq C2 exon
GGTGAAGTGGCTCCATTTTCTTGGGCAGCCCTACATGGTAAATTCAGGTCTCTGCTCACAACAGAACCCAGGGAAGATTTGTGACAGATGGGGCTAAGTCGCAAACTTGCAGCCTAAGGCAGAATCTGAAGAACTTTCCAGAGTGTGCCCATATTTACCTGATCAGAGAGAAAAGAAAATCTGCAGAGGAAGCCGAGCCTGGCTGCTTGTCATAGCTGACACAGAGCCATCTGCCACAAACCTGTGGCGGCTTCAGATCTCCAATCCCTGCCACCACCCCAACTCAAATTAAATACAGATTCCTAGAGACGTTATGATGGTTACACATGTCCTCGGCATCACATGTAGGAGACTGTTCAAAAAAAAATCTGTGGCCTGTTGTATAACCGCACTCATGTATCCCATATGTGGTGCCACATTGAATTTCCGGTTGAATCCGTTTTTATCCTTTGTACTGGATGACACGGAGCCTGAATTCTTTCTTTCTGCCGACACGATGGCAGCCAAACTGCAGCTTCAAACACTCACACTTGGCTGAGTTTCTACCTGGGTTGCCAGGTTATCATCGGAGCCTTCTTGTGTCCTCAAAGGGCCACGGGGCCTAGAAAGAGGATCAGAATGCTACTGAACTAATTGGGCAGCCATCTCAAAGCTGCTGTAGGCAAAGGGCTGCTGTAGCACTTTTCTTTTAGCAAATTAATGACTCTCTGGCAAAGGAGTGTTTAAGTGAAGGCATTAATAAGGGCTCTGGCAGGTATTCCCATGATTCTCAGAGTTCCATTTGCATTGAATTAATCTTAAAGAAACTTGCAAGATAAACAGCTGGAATTCGGACAAACATGGCAGATTCAGTGAGTGAAGTCCTCTCATCCATAAAATGAACACGAGATACTTGTTTTAAAATTTTTTCCCTGTGGGTAAAAATAGAAAAATCAGAATGCTTATAACAAAACATAATTTGGTACAAAATTCTTCAAAATACTTGTATCCAACTATAAATATATTCTTCTTGAGATAAGTCACTTACGATTCTTGCTCTGTTTGTTGGTGTAAAGATGTTTTAAATGGCTGGATTGTAAAATACATTTTTAATAAACTGCCCGCTGCAATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036890-Gtdc1:NM_172662:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=FE(19.6=100)
A:
NA
C2:
PF0053415=Glycos_transf_1=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: