HsaINT0073147 @ hg19
Intron Retention
Gene
ENSG00000121964 | GTDC1
Description
glycosyltransferase-like domain containing 1 [Source:HGNC Symbol;Acc:20887]
Coordinates
chr2:144703581-144709640:-
Coord C1 exon
chr2:144709549-144709640
Coord A exon
chr2:144704703-144709548
Coord C2 exon
chr2:144703581-144704702
Length
4846 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
3' ss Seq
CTCCCTCCTCCTCGTTGCAGGGT
3' ss Score
11.28
Exon sequences
Seq C1 exon
CTGAATATCTGTATTCTACACCTGAACAGCTTTCAAAAAGGCTCCAGAATTTCTGCAAGAGACCAGATATTATAAGAAAACATCTCTATAAG
Seq A exon
GTAGTTATTGAGAAGAGATTTACATGGTATAAATGCCATATTGAAGTACAAAGAAAAATCTTAAAAAAAAACATTTAATTAACATACTAATGTTTAAAGGAAACATGCTAGGGAGGGATATTAGTTGTTACACTAACAAGGATTAATTAAACTGGATGCCAGTTGTATTAACCTAGGTCTTATGAAATACGTGCACTTAATGCACAGTACATGCTTTTTTAAAATTTACTGTTTTCTAAGATGACTGTCCTTTACATTTAGCCCCTAGAGGCTTATAAAAATGAACCTGAATTAATGTAACTCATTAGTTTAAAAGGAAGTAAAGGAAAGATTCTACAATTATACTAATGAGGATAAGCCTTTCTTCCCATCATAATGAAATCTTTAGTCCTCAAAAATTCAGGTGAATGACATTAGTGAAGTTTGGTGTTCATTTTTGAACTACTTGAAAGGTGATTTTTAAGAATTGAATATTTCTCGCGTCCAGTTTAATAAAAATGACATAAAAAATCCTCAGTTTCTTTAGAATAAGAATGTCAGTCTCATCTCTGAATGGCAAAGGGAAAATAGTGTAAACAGCATCATCATTCACTACCCTCATTCGTTATCTTCTTTTCTTTATTTGAATCAAGAATTTTACATTGTTGAAATAACAACACAAAGAGGCCCTACTAAAAGTCTAAGTAATTGAACTAGGATAAATCTGCTTTATGAGTTTTGAAGGTGGCTCTAGGCCATAAGTAATATACCTTTTTATATTCTTCGAATGTAGCATCTTCATTTTACATAACTCCAGTATAGTTTACATCTAGCAGTTTTATAATCTAACATATTTTAATTTTCCTATGTTAATATATAACCTTCTACATGAAATACAGTTCTCTGCCTTTTTTTTTCTCCCTTCCCTGTTCGTAGCCTAAAATACATATTTACATAGTGATACATCAAAACATGACTTTGTTTCTACAGGAAACAGTTAAACTTCAAGAAAAAGAGAGAGAACCAAAAATGCAATTTAACACCCAATTTCAAGCTCATTATCTTTCATTGTCTATTAACTTGGCAATGGTTCAGAAGGTAGCTCATAATAGTTTAAAATGCTGACTGAACAGTTCCAGCTTCAGTATTACTCCTTGAGTCAATAGTATTGTATTGTATACATGGGAAGCTCCACAGAGAAAACAGTCGTTCAAGATTTACCTCAATATTTCCTAATTTTTAAAGTTCAGTAGTAGTTTTGTTTGTATGAAATATCAATCAAATAGTTTCCCATGTGATAGACTGTCAAAATATGCAGATAATGAAAATTGAGGAAATATAAGTATTAGTACAAATGAATTAATTTTTTATATATGACACAAAGCTATTTTCAGTGAGTTCTCTGTCAGATTATTGATTTTTTCCCTCTTTGGATGAATTTTTGGTAAAGTATTTGTAAATGTGTTTCCACCATCAAAATTTATCAGTTTGTAACATTGCTTAACCCTGTTATTCTGCATCTGCAAATTTTAAACCTCTGCAAATTTTTAACCATTTCAAAAGTCACTGCAAAAAGTTGCCTCTAGTAAGAAAAGAAAGCAGATGTCCAGTTGAAATATTTTCATTCAGCTACTGCCATAACATAGCTATAATTATTTATTTTACAAACAGCTTCTGAAAAAAAGAATGGCAGCTTAGTGGTATGTTGTTAATATACCAAATTGTTCCTCACACAGTTTAAATGATAACCTATATCTTAAATGTTATTTCATTGAGCTGTTACATGTTAGTACTTAAATATATTTTAGTTCATACACCATAAAAACCTGCATCTCAAAGTTTTATAAATTAGTAATTCATGCAAAAGCATTTATAAGAGCTTATTTATATAATTCATTTTTAAGCATCGTCTACCATGGATTTTTCTCTTATAAATCTGTAACACATTTTCACATTTGCCTTCATCCATAGTGCTTAGTGATATTGTCTAAAAATTAATTTCAAAAATTAATAAATTAGTCAAATTTTAAGTAATCAAGAGCTTTATGATACAATTATTAGGAAAAACTGGCATGTTGCAAGGTATAGAGTTAAAAGCACAGGAAGGACCACAGATTTAGTTTGTGTGTTGTTATAGGATTTAAAGCTAAAACAGAAAAAAAAATGCCTTCTAAACCTTTATAATAATGATACAACAAGTTATTGTAATTTTTTATCTTGTGTTTTATAAATAGACACATTTTCAGGTAACATTTGCTTTTACTAAATACTAGAGAATTAGCATTTTAGCTTTTACCTACTTTTCTTATGCAGTCGGAGAGGATCTTTTGTGAGTACTGTGAAAAGAATGTTGGGAGTTATTTTTAGATTTATTTCATTGGACAGTGCTGTTTTGCTTTTATAAAACATATGCTTCTAAGATCTAAAAGGATAGAATGTCACTGAATTCTTTAATTTGTTCCTTTTACATTTTTACACCTTACTCTTTTTTTGTTGTTAAAAGTTTACATTTTAAAATCATTTCAACTTCTTATCATATAGAGTTCACTTTAGGATAGGATTTTTCATATGGATTCACACTTAGAAATTTAATGACTAGAATAAGGCTACTAACACTTGGCTTTCTTCTCACATCAGACATTATACTTTCAATATGAGTGAGAGTTTGGGGTATAACTTGAAGCAGGATTTGAAACAGAATGCTAGTAAGTGAAAAGCAGAAACAGAATTTACTTTTTTTCTTAAAGTGACTCCTTCTATCGCAGAACACTTGTGTCCATGACTTCCCACCTGAAATAGTTTCAGACCTGAAATGTTTAAATTCCTCATTTGCATGTATGTGTGTACTCGCTCAGTCTCTTTCTCTCTTATACACACACACACACACACGTACACTTGGCTTAGGATTGTTAGAGAAATCCAATACATGCAAAAATTAAATGTTTCTTAATAATTTTAAAAAACCTAAAACCATTTTTCTTAATTTAAGGAAATATAAAATCACTTCTTACAAAGTTTATGTCTACAGTTGAGTCATTGACTATAAACTTGTATTGTCGAGACATGTACTTTTTCAGGTCAGGCAGATGCACTGGACACATACTTCTCACAGAGATAAAACAGGGAGCTCTTCGATGACTCCTAAGCCTAACTTGAACACAAGTTTCTAGAAGTAATCATAAAAGAATCAGCTAAGGATTGACTCCTTAAACTAACAATAGTTCTTCCTTTCTAACCCAAGCAAGTCTAATACTGTGAAGTTGTATTTTTTTGGCCTCACTTTTATTATATTATGTGAATTTACTTATGGAAAATTCTCAACAATTATTTGAGATTAGTATTTCATGCTTTTAGAGAACCCTGATCATTATATTTTTAAATGCTGTTGAAAGACATTTTATAGCTATTCCCTCATTACCAGTATAGAAATGAATATAAGAGTACAAATAGGGCAGTTGTGTAAGGTAGACATTATCCAGACTGACAGAAGAGATTTTCATTCCCATCCTATTTTTCATTTAGTTTTATTTATAAATTGAATGGTATTCTCTGGTTTAAAAAGAGAGAGAGATGCCATTCTTGCTTTTTGAGAGTGACTTGTAGTTTCTTAAGATTTTTCAGGTGATAGCTCCTGATTTTTTTGTTTTCCTCTTCAAGTTCTTCAACATTGACAAAACTTTTATAATCTTCTATTATTTGGAAGGGAGAAGAATTTTAGAGTTCTGCCGGAAACTAATTCCAAACAATAATTAAGCTTACAATTCACACTCATTGCCCAGAAAAGCCATTTGTGGTTATCTTGATTATGTCAAGCTATATGTACCTGAACCACAGACAAGCTACTTTGTTTCCTTCAAGAAACTGGTCACCTTATAGTCCCCTTTTAATTTGAGCTTAAACTCTAGATTTGAATAAGGTGTTGCTCACTAGTTTTAATACTGCTCCAGAGTCCTTACTTTTTCCTTAAACATGAAATGTTTGTGATGTTCTAAGAACTTCTAAAAGCTCTCAACTGCACCAGCACAATTAAGGCAAATTCTCAGTCTCAGTCTCAGTCTCTCACTCTTTCTCTCTCTCCCTCCTCTGCCTTTCCCTCCCTTCCCTTTCTTCTTCCCTCTCTTCCTTCCTTCCTTCCTTCTTCACCTCCTCCTGCAATTTTATTTGGTCTGGCTTTCCTCTGATTTGTCTAAATAAAATAAAAGGAAAAAACCTTTTAGCATCACAGATATGCTTTGGCTGATTAAGATCAGTTAGAGGTTTTGTCCTTCTCTGCTACTCATTTGCAACCTGATTCTAGGTGATCTTCTTGGCCTCTATGTGATTCATCTGTAAACCTGGAAGAATATTTTTTTAAATATCAATGTACCCCTGAAGTACTGGTATAATGAAATAATGAATATAAACCTGTTATAAATATGAAGCACTTTTTAAATTTCACATAATAGTAATGGCATTTATCTTTGTGTCTTCATCATTTAAAAGTAAAATTCACGGCAGAAACTTGTATGTACAGTGTTACGTGTCTTGTGTTTATATAAGTTAAAAGTTGGATGATGAACTTTCATCATCCAACTATGAATGGTTGTCATTCATAACATAAACCAAGAAATATGTGTGCAGCAGAATATACCCATTTGCAGAAAACAGTAGCCTTCTTCTCTGGTTGGAAATACAACGACACTTTAGACCAATCAGAAACTGAGATTTCCTGAGGTGATGAAACTCAAGAACCATTTACTTGGTGGCTTTTTGAAATGTAATTGACGTAAGTGATGCAAATTTGCAATATAAATTTTCAGCATACTTTCATCTTTTAGTCATTAATGCTCTTCACTTCTTTCTCTTCTCTCCCTCCTCCTCGTTGCAG
Seq C2 exon
GGTGAAATCGCTCCGTTTTCTTGGGCAGCCCTACATGGTAAATTCAGGTCTCTGCTTACAACAGAACCTAGGGAAGATTTGTGACAGATGGGGCTAAGTCACAAACTTGCAGCCTAAGGCAGAATCTGAAGAACTTTCCAGAGTGTGCCCATATTTACCTGATCAGAGAGAAAAGAAAATCTGCAGAGGAAGCTGAGCCTGGCTGCTTGTCATAGCTGACACAGAGCCATCTGCCACAAACCTGTGGCGGCTTCAGATCTCCAATCCCTGCCACCACCCCAACTCAAATTAAATACAGATTCCTAGAGACGTTATGATGGTTACACATGTCCTCGGCATCACATGTAGGAGACTGTTCAAAAAAAATATGTGGCCTGTTGTATAACCGCACTCATGTATCCCATATGTGGTGCCACATTGAATTTCCGGTTGAATCCGTTTTTATCCTTTGTACTGGATGACATGGTGCCTGAATTCTTTCTTTTCGCCGACACGATGGCAGCCAAACTGCAGCTTCAAACGCTCACACTTGGCTGGGTTTCTACCTAGGTTGCCAGGTTATCATCGGAGCCTTCTTGTGTCCTCAAAGGGCCACGAGGCCTGAAAGGAGGATCAGAATGCTTTGGGATTAATTGGGCAGCCATCGCAGAATTGTTTGTGGGCAAAGGGCTGCTTTAGCACTTTTCTTTTAGCAAATTAATGACTCTCAGGCACAGGGGGTTTTAAGTGAAGGTATTAATAAGAGGTCTGGCAGGTATTCCCATGATTCACAGAGTTACATTTGCATTTAATTAATCTTAAAGTTGCAAGATAAACAGCTGTAATTCGGACAAACATGACAAACACAGTGAAGCCAACTATCCCATAAAATGAACACTGACATACTTGTTTTAATTTTTTTCCCAGCGTAAAAATAGAAAAATCAAAATACTCCTAACAAAACCAGTGATTTTGATAGAAATATTTCTCCAATATACTTGCATCCACCTACAAATATAACCTTTTCAAGATAAATCGCTTATGATTTCAATAGTCAAACTGCTGTGTTTGTTGATGTAAAGATGTTTTGAATGGCTAGATGGTAAAATAAATTCTTAATAAAGTACCCACTGCAATTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121964-GTDC1:NM_001006636:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=FE(19.6=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)