DreINT0076117 @ danRer10
Intron Retention
Gene
ENSDARG00000063126 | gusb
Description
glucuronidase, beta [Source:ZFIN;Acc:ZDB-GENE-070705-256]
Coordinates
chr5:1835307-1840923:-
Coord C1 exon
chr5:1840738-1840923
Coord A exon
chr5:1835489-1840737
Coord C2 exon
chr5:1835307-1835488
Length
5249 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TTTTGTTTCCCATCATGCAGTGG
3' ss Score
6.54
Exon sequences
Seq C1 exon
ACGGGTCCAGTGATTGACATGCCGGTGCCGTCCAGCTACAATGACATCACACAAGACGCCAAAATCAGGGATTTTGTTGGCTGGGTTTGGTATGAGAAGGAAGTGCTGGTTCCCACACGCTGGATCCAGGACCGGGGAACACGCATCGTGCTCCGAGTGGGAAGTGCACACTATTACTCTGTGCTT
Seq A exon
GTAAGTATGCATTTCATCATACATAAAGCTGACTGCAAAATTATTCATTAATTAATTTGGCCTCCTGTGAAACTTGTATAATTTTTCAAATATTTTCCAAATGCTGTTTAACAAAGAAAGGACATTTTATAGTACGTATAAAATATAATATTTGTCTTGAAAAACACTATTAATTTTAGTTTGGCTGTAACCTAAGCAGTTTTTCAAGTTAATTAAATACTTTTTAAGGCCAATATTTTTGGCCCCCTTAAGAAACATTTTATTCGATTGGCTACAGAACAAACCTTAAAAAGGTAAATACTAGTATCTTGCAAAAATAACTAGTAAAATATTGTGCAAACTGTTTAAGTTTGTTTAGATTCTCTGCTCGAGCTCAGACTTGACCCGATCAGACTTGTGGGCCGGGTCAGGCTGATATTTCTAGCCACTGTCTTTGGGCCGGGCCGTGATCAAGCATTTGTGTGTTCTTTTTTAGTCATTACTTAATTAGCCTAATTGAGTAGAAAAGCAATGCACTAATTAGGAATATTATATGAATATTTTAGCAAAGTATGCCTAAGCAACACGTGTGGTTCTACAAAATTGCACAATTCGCAACACGTGTCATGCGCAGCAACACTTTAGCTCCTGCAACAGCATCTCCTCCACTGGCACACATTCACACCAAGGTTATTATAGTTGACAAAAACTAACAAAAAATTGAAAACTAAAATGTAAAATAATTGTCATTAACTGAAATAAGAATAAAAACGAGAGTTTTTTTCAAAAACTAGAACGAACTGAAACAGTGTTGTGTAGATACAAAACTAACTGAATCTAACTAAAATGATAGCAAAAACTTTCTTCGTTTTCGTATTTGTAAATGTATTTAATACATAATCTTACTGTAAGCCTTTTAAAAGTAAATACAATCCGCGCTGCAGGTGTTTGTGTTTGACCCTTTCGCACCTCAGTCTCCTGCTGCCATTGGCCAGATCAAGCCGGCTCTCCTCCAGTCATCCTCGCTGTTGGTCCCGCGACAAAAACAACGAGTGAACATGACAGCAGCACGGCATTAAATACAGACACTTAAAACTATTACTTTAACACATTTGTGCCCAATAATAGGGTTTATTTCTGTATCGCGATCACGAACAAATCTTTTTAACCGGATCTTCTAAGTGAACCGGTTGAACTAGTTCACCAAATCAAACTGAATCATTTGAAACGATTCGCGTCTCCAGTAAGCACTCATCCACCAACTACATACTTTATAAGAAGCCTGATGCTGCGTTCACACCAGACGCGGCACGCGCATCAAGCACGAGTAATTTACATGTTAAGTCAATGCAAACGCGCGGATAGACATCCTGCGGTGCGATACGCGTGAAGGGCGCGGCGGGAATGACGCGAATGGCGCGGTGCGAATAGCGCGATACGCGCAAGGCGAATTGAGCGTTTTGCGCGTTTGCCGCGCTTAACGAGCATTTCGCACGAATCTCATGAATTCGAAAATCTGAAATTCAGCGGACATTCGCGCCGCGTTAACCAATCAGAAGCTTGCTCTTGTGTGGGCGTGATTGTGACGTAGAACCAGTTGATGGTGTCCCGGGGGAAATCCTCCAGGCGACACCGACAACAAGTCATCAAACTGGACTGTTGCTCAGTCAGAAGCACCGCTGAAAGCCTCCGTCATCCAGGTTCAGTTTCTGGAGGAGTTTATGAGCTCACAGAGCTGGATGAACCTCTGAAAGCATGTAGTGGACTCAGACACGGTCCTAAACGTATCGACGCTGTTTTTCAGTCTTCATAAAGCACATAAACACTGTTATTTTCTTCACAAAATCCATGTTAGCCATTTAGCAACGAAGCTACAGTCACCGGGAAGACAGAAGCCCTGCCCATCACGCAAATCCGTGTCTGTTCTGAAGTAAATTTGACTCGCGAATGAAGCGGATTTGACGTGCGAATGAAGTGAGTAAACTCAAATGTTTACGCGGCTATTTACGCACGAATATCACGATTTATCCGCGCGTTCCGAGTCTGGTGTGAACACAGCATGATACCCCCCTCTGACTCTAAAAAATCCAATATATACTCTCATTCAGTTATTAGAACAGCAACGTTGCGGTGAACTGATAATACTGCGCATGCGTGATTCAGTGAACCAAAACACAAAACAGTACAGCCCGCTGTGTGACTGAACTGAACTTGGAACAACTGCAGCGCGGGTAAACCGAGGGCTTAAATGAGAGGATCTGGAGAAAAACGTAAGTTTATTTCATAACAGACAATCGTAATGGAATTAAAATAAGTGAATCATCATTCAGTTGGGTTTACAGTTAGTAAAACTTTACTGTAAGACATTTTTCAGATGATGGCGATGTTTTAACTGACTGAAATTACTATTGCTGACTACATAATGCTTAGTCCTCACATCCGCATTAGAAATCTGAATTTCCCATCACCAGGCCAGGATTAATAATTCAGAGGCCCCTGTGCACAATGTCTTGTAGGCCCCTTATAACCGCACCCCATAGTTGAATTAAAAAATAATATTAATATAATATTTGTTAAATAAAATGTATCTATAATAATGTATTGCCCACATTTTTTAAATAGATGATATACACTACATATATTTCCATTCTACAAAGATTTTACTTATTTTTAAAGCAGTTAAAGCACACTTTGAAAAAAATACAACTCAGGGAAATTTATGGATTTTAATATACTTGTTCGAGTTCACTAAAGCAGTACTAAAAATGTATATTTAAGGGTATTTTTAACGTATAACTTCTACAAACTCATAATGCACATGATGTGGATAACACCTCTCCAATCCAGCTCTAGGAATCTGATAATACACACATAACACACACACTTATTATATATGATGATAGTGTTCATGTGTCCTCTGAATACATGTTTCGAAAAACATATGGCTGAGTTTTTATTATACAATATTTATCCTGTTGATTTTGAATCTTGCACCTAACAAATATCCTCATTTAGAAAAAAAAAATGAAACTAATAGTGAAACTAATAAAAACTAAACTAAAACTAAGACATTTAAAAAAACTAATAAAAACTAGGAAATCTGCCTCTACAACTAATTAAAACTAACTGAATTTAAAAACAAAAAGTCAAAAAGAAATAGAAACTAATGAAAAATCCAAAACTATTATAATCTACACACGCAAGCAGAGCTATAGCAGCGCATATGTATAGCAGAAACATATAGGAGATATACATATAGTATAGGAGAGTCAAGTAAGGAGTGCCTCAAGGATCAGTTTTAGGCCCTTTGCTATTCACAATATACATGCTGCCCCTGGAAGATGTTATTATGATCAGTTTTCACTATTATGCAGATGATACTCAATGATAGGTAACACTTAATTTTCAGTTGCAAGTCACACCATTTACCACTGCCTTGTTACCTGCCTATTATTAAGATATTAACTGTTTATTAGCACCTATAGTGTATGGTCTTATTCTACATCCCTAATCCTACCCAATACCTAGACTAGAAATGACTAGAAATGTGCAGTTTTACAATATCTTGCTGATAATGTTTTTAGTTATCATTTAGTATTAGTGTACACGCACCGGACACTTTATTAGGTACACCTGTCCAACTGCTCATTAATGCACATTTCTAATCAGCCAATCACATGGCAGCAACTCAGTGCATTTCGGCATGTAGACATGATCAAGGCGATCTGCTGCAGTTCAAAGCGAGCATCAGAATGGGGAAGAAAGGGGATTTAAGTGACTTTGAACGTGGCATGGTTGTTGGTGCCAGACAGGCTGCTCTGAGTATTTCAGAAACTGCTGATCTACTGGGATTCTCACGCACAACCATCTCTAGGGTTTACAGAGAATGGTCTGACAAAGAGTAAATATCCAGTGAGCAGCAGTTCTGTGGGCGCAATTGCCTTGTTGACGAGGTCAGAGGAGAATGGCCAGACTGGTTCCAGCTGATAGAAAGGCAACAGTAACTCAAATAAGCACTCGCCACAACCGAGCTCTGCAGAAGAGCATCTCTGAACACACAACACGTCCAACCTTGAGGCGGATGGGCTACAGCAGCAGAAGAGCACACCGGGTGCCGCTCCTGTCAGCTAAGAACAGGAAACTGAGGCTACAATTCACACAGGCTCACCAAAACTGGACAATAGAAGATTGGAGAAACGTTGCTGCTCTGATGAGTCTCCATTTCTGCTGACACATTTGGATGGTCGGCTCACAATTTGGTGTCAACAACATGAAAGCATGGATCCATCCTGCCTTGTATCAGCAGTTCAGGCTGGTGGTGGAGGTGTAATGGTGTGGGGGAGATTTTCTTGGCACACTTTGGGTTTATTAGTACCAGTTGAGCTTGTGTCAACGCCACAGCCTACCTGAGTATTGCTGCTGACCATGTCCATCCCTTTATGAGCACAGTGTCTCCATCTTCTGATGGCTACTTCCAGCAGGATAACACACCAATTTCATAAAGCTCTATCATCTCAGACTGGTTTCTTGAACATGACGATGAGTTCACTGTACTCAAATGGCCTCCACAGTCACCAGAGCTCAATCCAATAGAGCAGCTTTGGGATGTGGTGGAACGGGAGATTGGCATCATGGATGTGCAGCCGACAAATCTGCAGCAACTGTGTGATGCTATCATGACAATATGGAGCAAAATCTCTGAGGAATATTTCCAGTAGCTTGTTGAATCTACGCCATGAAGGATTAAGACAGTTTTGAAGGCAAAAGGGGGCCAACCCGGTACTAGTAAGGTGTACCTAATAAAGTGGCCGGTGAGTGTACTTCTGCAGTGTTACAGATCAAACAACTAAAGTTACATTTTATTTTGTCGTCTTTTTCATTCCTTTAAACCCTGTTTTAACATATTGTAATCAGTCTTTAATCATTTATATTCTTATGTTTTATGTTTATTTTATTCCTGTTTATGTAAAGCACTTTGAATCACCATTGTGTATGACATCTGCTATATAAATAAACTTGCCTTGCCTAAATTGCAATCTAAGAAAAATGTGTTGAGAAATAAAAACATCTCTCTGTTAAACATCACTTGATTAAAATTTCACACAAAGGCTGATCATGTTGCCTTCAACTGTACATTGTTATCTCTTTTGTCACAGGCTGACTGGGCTATTTGTGTACGATCTTGTGAGTGTCATGTTGTCTTAGATTCATCTGCGTAGTCACAGTCAGGACTGACGCATGCTTCTGTGTTTTTGTTTCCCATCATGCAG
Seq C2 exon
TGGGTGAACGGGGTCCAGATGACTGAACATGCGGGCGGTCATCTGCCATTCGAGGCGGACATCAGCAGCGTTCTGCGTCAGAGCTCTGGAGGTCCGTGTCGAATCACCATAGCAGTGAACAACACTTTATCTCTGGAAACACTTCCACCAGGAACCATCCAGTACATGAACGACCGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063126:ENSDART00000091932:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0283713=Glyco_hydro_2_N=FE(32.3=100)
A:
NA
C2:
PF0283713=Glyco_hydro_2_N=FE(31.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]