GgaINT0132581 @ galGal3
Intron Retention
Gene
ENSGALG00000002542 | GUSB
Description
NA
Coordinates
chr19:4895672-4896194:-
Coord C1 exon
chr19:4896006-4896194
Coord A exon
chr19:4895854-4896005
Coord C2 exon
chr19:4895672-4895853
Length
152 bp
Sequences
Splice sites
5' ss Seq
GTGGTACGT
5' ss Score
8.61
3' ss Seq
ACGGCTCTCTTCTGTTGCAGTGG
3' ss Score
9.48
Exon sequences
Seq C1 exon
ACTGGTCCTGTTATTGACATGCCAGTGCCCGCCAGCTTCAATGACATCACTCAGGACCCCCACTTGGAAAACTACATCGGATGGGTGTGGTATGAGAAGGAGGTGCTGATTCCTCAGCGTTGGCTGCAGGACGACCTCAGCACCAGGGTGGTGCTCCGGTTCGGCAGTGCCCACTACTACTCCATCGTG
Seq A exon
GTACGTTGCACGGGTGGTTGTGTTTGTGTGTCCAAGGTCATACCGCACTAAAATCCCAATTGCCCATCGCTGTGCTCCTTCCCTTCTTGCTGCTACGACTGCCACCAAATCTTAACCCAGCCTCTTGGGCTCACGGCTCTCTTCTGTTGCAG
Seq C2 exon
TGGGTGAATGGAGTGCAAGTTGTGGAGCATGAAGGCGGCCACCTCCCTTTTGAAGCAGATATAAGCAGGATTGTCCAGCGCAGCCCAGGGGTTCTCTGCCGCATCACTGTTGCGCTGAACAACACTCTGACGCCGCACACTCTGCCTCCGGGGTCAATTCAGTACATGAATGACAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002542:ENSGALT00000004011:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF0283713=Glyco_hydro_2_N=FE(32.6=100)
A:
NA
C2:
PF0283713=Glyco_hydro_2_N=FE(31.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACCCCCACTTGGAAAAC
R:
CAACAGTGATGCGGCAGAGAA
Band lengths:
250-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]