MmuINT0075321 @ mm9
Intron Retention
Gene
ENSMUSG00000025534 | Gusb
Description
glucuronidase, beta [Source:MGI Symbol;Acc:MGI:95872]
Coordinates
chr5:130476231-130476812:-
Coord C1 exon
chr5:130476627-130476812
Coord A exon
chr5:130476413-130476626
Coord C2 exon
chr5:130476231-130476412
Length
214 bp
Sequences
Splice sites
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
3' ss Seq
ATCTCTCCTTGTGTCTGCAGTGG
3' ss Score
8.71
Exon sequences
Seq C1 exon
TCGGGCCCAGTCTTGGACATGCCTGTCCCTTCTAGCTTCAATGACATCACCCAAGAAGCAGCCCTTCGGGACTTTATTGGCTGGGTGTGGTATGAACGGGAAGCAATCCTGCCACGGCGATGGACCCAAGATACCGACATGAGAGTGGTGTTGAGGATCAACAGTGCCCATTATTATGCAGTTGTG
Seq A exon
GTCAGTATAGGGAGAGGTTGGCTGGGGGCAAGGCAGTCTGGGCTGTCCAGAAGGGCTCTGTGTCATGGGTCAGAGAAGGGTTGCTTTGTGGGCTCCATTAGAACACCATTCTTCCATCTGATGGCGGGGGCCCTCTTCTGGAAGGGGGTACCCAAGACAGACAGCAGAGCCCTGTGGCCATTTACCCTCTGCTCATCTCTCCTTGTGTCTGCAG
Seq C2 exon
TGGGTGAATGGGATTCATGTGGTGGAACATGAGGGAGGTCACCTCCCCTTTGAGGCTGACATTAGCAAGCTGGTCCAGAGTGGGCCCCTGACCACCTGCCGGATCACGATTGCCATCAACAACACACTGACCCCTCATACCCTTCCGCCGGGGACCATCGTCTACAAGACTGACACCTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025534-Gusb:NM_010368:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0283713=Glyco_hydro_2_N=FE(32.3=100)
A:
NA
C2:
PF0283713=Glyco_hydro_2_N=FE(31.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCCTGTCCCTTCTAGCT
R:
TGAGGGGTCAGTGTGTTGTTG
Band lengths:
307-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: