RnoINT0068786 @ rn6
Intron Retention
Gene
ENSRNOG00000000913 | Gusb
Description
glucuronidase, beta [Source:RGD Symbol;Acc:2772]
Coordinates
chr12:30204173-30204761:+
Coord C1 exon
chr12:30204173-30204358
Coord A exon
chr12:30204359-30204579
Coord C2 exon
chr12:30204580-30204761
Length
221 bp
Sequences
Splice sites
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
3' ss Seq
TAATTTCCTTGTGTCCGCAGTGG
3' ss Score
8.65
Exon sequences
Seq C1 exon
TCGGGCCCAACCTTGGACATGCCGGTCCCTTCCAGCTTCAATGACATCACCCAAGAAGCAGAGCTTCGGAACTTCATTGGCTGGGTGTGGTATGAACGGGAAGCAGTGCTTCCACAGCGATGGACCCAGGACACCGACAGGAGAGTGGTGTTGAGAATCAACAGCGCCCATTACTATGCAGTTGTG
Seq A exon
GTCAGTGTAGGGAGAGGTTGGCCCGGGGCGGGGAAGGCAGTCTGGACTGTGGAGGAGGGCTCAGTGCCGCCAGGTCAGAGCAAAGGTTGCTTCGTGGGCTCCGTTAGAACGCCGTTCTTCCATTAGGCTGATGGCGGGGACCCTCTCCTGGAAGGGGGTACCTGAGGCAGCAGGGCCCTGTGGCCACTTGCCCTCTGCTCGTAATTTCCTTGTGTCCGCAG
Seq C2 exon
TGGGTGAATGGGATTCATGTGGTGGAACATGAGGGAGGTCACCTCCCCTTTGAGGCTGACATCACCAAGCTGGTCCAGAGTGGGCCCCTGACCACCTTCCGGGTCACCATCGCCATCAACAACACACTGACCCCTTATACCCTTCCACCGGGGACCATTGTCTACAAGACTGATCCTTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000913:ENSRNOT00000001215:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0283713=Glyco_hydro_2_N=FE(32.3=100)
A:
NA
C2:
PF0283713=Glyco_hydro_2_N=FE(31.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCACCCAAGAAGCAGAGC
R:
CGGTGGAAGGGTATAAGGGGT
Band lengths:
293-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]