DreINT0083352 @ danRer10
Intron Retention
Gene
ENSDARG00000028222 | itgb8
Description
integrin, beta 8 [Source:ZFIN;Acc:ZDB-GENE-071213-3]
Coordinates
chr19:2443274-2447574:+
Coord C1 exon
chr19:2443274-2443466
Coord A exon
chr19:2443467-2447327
Coord C2 exon
chr19:2447328-2447574
Length
3861 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
GACGTCATTTCCTGTCTCAGGCA
3' ss Score
7.51
Exon sequences
Seq C1 exon
ATGGCTTGTTTATCTTGACAGAGGTTTCTGGACGGGGCGCATGTAAGCCAGCGATGCGGATCTGTGTCCGACCTGCGAGTCAGAGGATGTGAAGAGGAATTTATCGAGAACCCGAAAGTGAAAGTGGAAGTAAACGCCACCATCAGCAGCTCACAGGTGGCACCAAGAGAAATCACCATCCACCTACGACCAG
Seq A exon
GTAACAGCTAAGTCAGATCCTAAACGTGCCATGCAAACCACTTAACCAATGAAGAACTGCCATAGCAACACATCTTAACAACCTTCATGTAGACCCTAGCAATGCTTTAGCAGCCGTAAATACCTTATAAACGAGGACACCTGAGCAACCTCACAGTAATGACAACCACTAGCAACACCTTGGCAACTCAAAACATTTTAGAAATAACAACACCTTAGCAACTCCCTGGTAACCACTAAGAACTTACTTAGCTAACCCTCTAGAAACCAGAACAACTTGGCAACCTCACAGCAACACCATGACGGCCAACAAGAACAGCCTTAACAACCAAAATGCACCACATAACAGTGTCAGTATATGCAGAACACATTAGAATATCAATGCCATGGTAACCAGCGAAGACACCCAACAACTTTTTAGCAAGCACCCTAGAAACCAGTATCTTTAGGCCCCGTTTACACTAATGCGTTTTAGTTTGAAAACGCATAAGTTTTGCTACGGTTACGCCACCCGTCCACACTACGCCGGAGTTCTCGAGCGCCGAAAACGGAGCGTTTCGAAAACGCTGGAGAGGCCGTTTTTATTCTGAAACGCTGGTGCTCCGTCTCAGTGTGGATGATGGAAAACGGAGACATCTGAAAACGGAGGCGGGGCTGCCGACGTTCGCCTCTCTGATTGGGGCTTTTCCTGAATATTAAGTAGCCTAACACACACAGTTCAGTCCTGCATTTTCTCCGTGTAAGTTCAGACTTCGCAAGTTTGATCAAGGCTGCAGTCTCTTCTTCTCAGTTTGATATGGAAAACAGACTATACCGAGGACACGGGTACATCTTCAAAGGGAACAGTGTACTTTATAACTTCATTCACATCACCCTGGCTTCGTTGTTTCACTTTCTCAACAATAAATTGTATACATGATTTAAGGAACTGCCTATTTTCATTTTAATATTAGCAACTTATACAGCAGAAATGTTGAGGCGTCGTGCTGCATATATGAGCGTCATCTTCACTGTGTGGATAAAACGGAGCCGATAACAACTGCCTCCTTTCAATTTCAGTGAAAATACGAAACGCACCCTCTCTTTTGCTGAGTATCAGTTTTAATAATCGATAATGGCCATTTTAAAAGTATAACATACAATAAGTTTATACATTTTAGGAAATAAAGGCAAGCGATCAGTCAATATACAGAATGTACGTACTTACATTAATCATTAACTTATCTTTGCGCTCAGCCAAAACACGTTACCTGAGAACAAGTAATAGATTCCAATGCCCAAAATCAGGGAATATGTCGTTAGATAAAGACAACAATGAATGAAATATCCCGTTTAATAAATATAGTAAGATGAGATCCAGCGGGAGATGCTTGATGAGAAGTCCGACTAGCAGAGCTCTCATCTGGGTATATGGGCTGCAGCGCTTGCCCGAGAGTGTGTGTGTGGTCACGTGATGTGCGTTTTCAGCGTTTTGATGTGGACGGAGAGCAGTTCAGAAACGCTGGGTAAAACGCAAGTGTGGACGTGGATTGTTTTCATTCTAAAACGCCGTTTTAAAACTAAAACGTACTAGTGTAAACGGGGCCTTAGAAACCTCACAATAACAGCTATCAAGGACACCCTGGCAACACCTTAGCTAACAGAAATACCTTATATACAAGAACATCATAGCAACCTATCAGCAACACTACAACAACCACTAAGAACATCCTAGCAAAGTGTCTCTAACTCAAAACACCTTGGCAACTTCATCGGTATACCACAACAACCACCAGGAGTACCCTAGCAACAGTTTAGCAACCCAAAACAACTCACATGACAAGTAATTTCCTGACAACCAACAAGAACACAAGCAACACCAAAGTAAAAGTTGCGTAGTAACTTAGCAACCTTACAGTAACACTATGGCGATCAACTAGAACATACTTAGCAACCCAAAACTCTTTAGCACAACATAACAGTGTCAGTGTATGCAGAACACATTAGAATAACAATGCCATGGTAACCAGCAAAAACACCTAAAATGTTTTAGTAAATACCCTAGAAACCAGAGTCTTTAAAGGGCCATGAAGCCCCCTCGTTTCAGCAGGGGGTTTTCACACCTCTACTTTGGAAAAAGTCAGAAAAGTGGGCGTGTCCAGCTCTGTTTAGGGGGGAGTGTCGGAGGAAGAAAAGAGGCTTGGTGTGGGAGTGTCCATTTGGGCGCGCTGAATTTCAGAGTCAAAACACACACACACAGCAGACAATGTGACTGTGTTTACATGGACATCTGTAGTCGAATTATTTGCCAAATTATTAAATGGTGGACTTTAACTGCAGTTTGGCTCTTTCATTCAGGGAATTCATTCATGTCCCTCCCGACAAACGAGATATTTGATTCGAGGAACTGCTCTAAGCATGTATTTTTCATGCAATGTTTGAAACCGCACAGCGAATGAGAGAAAAAAAAACTCAGCATTTCCCGGAAACTTAGATGCACTCGGCAGGTAGCGTCAGAAAGCCGCGTGTGTTATTCCGGTCACAAAATCCAACACGAGGTTATAGTTTGGTTGTAACTGTTAGTGCAAACTTGTTTACACTCGGTGCAATAGTTTGTTTGATACGAATAAAATACGAACTGAATAAACAAAGAGCACTGGTCGCTCACTAACCAAATCTGTAGAGACAGGACAATCACCAGCAACTAGAGCTGCGTCTTTATTTAGAGGAGATTAACGTTACAAGCGAATCCGGTGCCCACAAATCCGGCTGTGTCCGCATACGCTGTTAGCGGATACGCTTCGTGGAGGGGGAACTGGAATTCCAGAAGGGAACAGAATCGATTGCTACACCGGATCTCAGCGTTCGCAGATGAGAACAGCTCTCAGGTAAACAATAATCCTCCTTAGACACGTAAGTTATTGTCGTCGAGCGTCGCGTACACTTAATCCACACGAGTCTGCGCTCTCACAGAGAGAAAATGAAAACAAAACTAAACTGCAGCAAACTATAAAAGCAACACTTCACACTTGTTTTGCCAACACAACATGGCGTCTCTGTCGTCTAAACACTGTGACACTAATGAATATTAATGAAGTTGCACAATAGAGCGCGCTGATTGGTTTGAACCAAGCCTTACTCATGCATTAATGCATCACACTGTAAGACGTAATAAGACACATTCTGGCACAGACGCCCAGTCTGCACGCTGGAATACACGCTATTATGTCATTGCCGTGACGCAGCTTCAAAAATTCGTTTCAAACCGGAAGTACGAATTTGCTTGAAATAACGCAAAAACAACCAATTTACACTTTTTAGTGAAATATAGGTGTCCTAATAGTGTTTTTAGCAGTGTGGGACACATATACCACTGTCAACAGCTCAACACATGTGTTTTGGTGTTTCGTGACCCTTTAAAAACTTTACAGCAACACCACAACTGGCATCAAGAACACTCCTTAGCAACCAAAACACCTTAGAAACAAGAACACCACAGCAACAATAAAACAACCAATAAGAACACCTTAGCAAATCATAACCAACTTAATGCAACTTATAAACCAGAACACCTTGGCAACCCCACAGGAATATCACAACAACCATCAAGAATATACTAGCAACAGCTTAGCAACCCAAAACAACTTAGAAATAAGAACACCTTAGCAACTCCCTGACAACCTAGAATAACACTTTAGCAACTGCATAGCAACACCATTACTACCCATTAAGAACAGCCTTAGCACCCCCCCCCACCTTCAGTTCGTGACAACCCCCAACCACCCCCCACCCCCCTCACTCTTCTTTAAATATATTTTATCCTGCACATGCCCCTTGGATAGTCTGTGCACGGGGCTGGTGATGACGTCATTTCCTGTCTCAG
Seq C2 exon
GCAGCGAGGCGAGTTTTGTGATCGAAGTTCAGCAGTTGGAACGATACCCAGTGGATCTGTACTATCTTGTGGACGTCTCGGCCTCCATGCAGGACAACCTGGATCGGCTGAAGACGGTGGGTTTGGCTCTGTCTCATCAGATGAAGCAGCACTCCAGTGACTTCAGAGTGGGCTTCGGCTCTTTCGTGGATAAACCAGTGTCTCCATACATCGACGTGCACCCTTCTAAACTACTCAACCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028222:ENSDART00000136138:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0036213=Integrin_beta=PU(16.6=98.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]