GgaINT0090890 @ galGal3
Intron Retention
Gene
ENSGALG00000010875 | F1NE25_CHICK
Description
NA
Coordinates
chr2:30020189-30022882:+
Coord C1 exon
chr2:30020189-30020363
Coord A exon
chr2:30020364-30022635
Coord C2 exon
chr2:30022636-30022882
Length
2272 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
3' ss Seq
ATTTATTTTCTTTGAATCAGGAA
3' ss Score
8.15
Exon sequences
Seq C1 exon
GATTTCATGGCTGACTCAACACAGAAGGGACGCTGTGACACTGTTTTCAACTTACTGAAAAGAGGCTGCCAGTCGGATTTTGTAGAAAGTCCCACAGTTCATGTTACAATACCCAGTGACCAAGAAACAAATACACAAGTGACTCCAGGAAGAGTTTCAGTCCAACTGAGTCCAG
Seq A exon
GTTGGGTTTTCTTTAGCATACTGATATTATAGTGAATTAAAACACAACCCAATAATATTTAAATACATATATTTTACAAAGAAATTGGTGGACTCATCATCTTGAAGAATGATGCTAGAACATTACACTGTAGGACTATGAATGTGTTGCTCCCATATTCAAGTATGGTCTTCAGCAAGAAGTGTTTCTGTGACAGACAGCTTAAGGTCAAAATAATGCAAGTAGTAAGTGGAAAAGGGATCTTAGGCAGTCTTTTCTGTTTTCTGTTATGATTTTATGATTCTTTTTCTTTTCAAAACTAATTTTCCATTACATCCATATAAAATGTGTTCCTTACTGTAAGTAAATTGGGCTAAAATTTCTAATTCCTAAATTAATATTTTGATAAGCTTCTTGATTATTTGTTTATGCTTAAGTGCATTGACTAGACAACTGTGAAGACACCACAGCCAGTGTGAAAGAGAGGATTGGACTCATAAAGAAAACTTAGATATTCAATTCTTAATGTTTCATTTATGACACATGAGACACCTGGCCCTGACAGAATCTATGTGTCCTTTTATGGATTTGGGTCTTTTTAGTATACCTCTGTTTGCCCTCTACTGAACTGATCAATTTTTGGTCGAAAAATATTTAGTTAATATAAGAAGTCTGAATTACTTTTGTATCTTGCTGATTTTAATTGTATAAATGATCAGTCTTTGTATATAAGTAATTTTTTATTATTTGCAAGGAAAAAGAAAGGAACTGTGGGAGCGTAAAGCCCTAAGTAACTCTAGTTTTCTGTCTTTATAATGATAAAACTGGAAAAGCAATGTCACTACTTCTACTTTCCCCAGTCTCCATTCAAAGAAGTGACTGATGGTCTGCTTTGCACTGAGTCATGGTATTGGGAACTGAGCTATCTCTAGAAATATCTACAATCACATTTATTTCTGAAGACTTTGACACAACTGGATTTAAAGAAAACTGGTCTAGTGGTTGGCAACCCTGCCTGTGGCAAGGGGGGTGAAACTAGATGATCATTGCTGTTCTTTTCAACCCAGGCCATTCTATGATTCAATGATTCTATGATGATCAGTGAACCATGTTGCCAGTAATGGAACAAAGCTCAGAGTTCCATATGCTGTGCTGAAGCTTCTGCTTAAAGGAGACTGAAGATTGAAATTCCTAGAACTACGGAAGAATAACTTTTGATATATAGACATTCTGCCTGCATTTTAATCTCCAGGGAAATTCACTGATATACAGTGTTAGTGGGACAAACATAAATTTTTTACAGTAAGCAGACGAAAGATGGTTTTGTTTTGATTCCTTTTTTTCATCACTATTTACAAGAATCCCAACTATAATGAATGGGAGAAAATATAGGTTGCACTTGCTGTATGCAACCTGGTCACTTACAAAAAAAAAAAAAAAAGTTCAATTTACATTGGCAAAGAGGAAACAGAAGTTACAATACACTGAAATTCTTCATGTCAGACTGAAAAAACATACATTTTGAAATATTCAGCTGGATTATGTTTGAAGAATATTAGAAGAAAAAATATTTAGGAAGCCTATTTAAAATGTACTTTGCATGTTTAACATTTCTAGGTCAAATCTTTGATAGAATTTGACACAGTTCACAGATGAAGTTATTCTGCAGGAAATACAGACATTTATTATCTTGAGATGAAAGGAGAGGATCTTTTTTTGTAATTTTTTTCAATATTAAAACCTGCTTTGTTTACTTTCATTTTGATCCTACTGAGTTTTCTCATCAAATCTTTCGAAACAAATTGGTCTAAGCTTGTGTCTAACTTAGCTAAGTTCTTCAGGCTGTGCTTTTGTCAAGAAATATACAGTTTTAGACACACATGATAGACTGTTTGCAGGATACATTAATATGCTTCCAAGTGTCAGCCCTGAAGTGACTGGCCACAATTTGTATGCAAATCTGTGTCCTTTTTCAGTCCTAACTGCTATTTGCTACAATGTCAAAGGGATTGCATAACCAGGAATTTAGAAGAAAGTGGGGAGAAATCAGATTTTCACAGAATGCTCCTGTGAGAGGAAGAAAAGCAAGATGTTTTCTAAGAAGAGTTCCATTACGGCTTATTTTTGAACTATGCTTCAAGGCTTCATTTACTCTTGGGAGGTTTTCTTATTTGCTTGTTTTTCTGTTTGCTGACACAAACAACTTTGTGCTGAGGTTGCTACAAAGGTAATACATTTTTAAGAGTGTATGTTGAAAAATAGTATTTTAAGTTATTTATTTTCTTTGAATCAG
Seq C2 exon
GAAGTGAAGCGAGCTTTATCTTAAAAGTTCGTCCTCTGGAGAAGTACCCTGTGGATCTTTACTATTTAGTTGATGTCTCAGCTTCTATGCACAACAATATAGAGAAACTGAATTCCGTTGGATTTGCTTTATCAAAGAAGATGGAGAATATTTCTCTTGATTTTCGACTTGGGTTTGGATCCTATGTGGATAAAACTGTGTCACCCTATATTAGCATTCACCCAGGTAGAATCCATAACCAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010875:ENSGALT00000037889:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.322 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(13.9=100)
A:
NA
C2:
PF0036213=Integrin_beta=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]