GgaINT0090890 @ galGal4
Intron Retention
Gene
ENSGALG00000010875 | ITGB8
Description
integrin, beta 8 [Source:HGNC Symbol;Acc:HGNC:6163]
Coordinates
chr2:30130508-30133201:+
Coord C1 exon
chr2:30130508-30130682
Coord A exon
chr2:30130683-30132954
Coord C2 exon
chr2:30132955-30133201
Length
2272 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
3' ss Seq
ATTTATTTTCTTTGAATCAGGAA
3' ss Score
8.15
Exon sequences
Seq C1 exon
GATTTCATGGCTGACTCAACACAGAAGGGACGCTGTGACACTGTTTTCAACTTACTGAAAAGAGGCTGCCAGTCGGATTTTGTAGAAAGTCCCACAGTTCATGTTACAATACCCAGTGACCAAGAAACAAATACACAAGTGACTCCAGGAAGAGTTTCAGTCCAACTGAGTCCAG
Seq A exon
GTTGGGTTTTCTTTAGCATACTGATATTATAGTGAATTAAAACACAACCCAATAATATTTAAATACATATATTTTACAAAGAAATTGGTGGACTCATCATCTTGAAGAATGATGCTAGAACATTACACTGTAGGACTATGAATGTGTTGCTCCCATATTCAAGTATGGTCTTCAGCAAGAAGTGTTTCTGTGACAGACAGCTTAAGGTCAAAATAATGCAAGTAGTAAGTGGAAAAGGGATCTTAGGCAGTCTTTTCTGTTTTCTGTTATGATTTTATGATTCTTTTTCTTTTCAAAACTAATTTTCCATTACATCCATATAAAATGTGTTCCTTACTGTAAGTAAATTGGGCTAAAATTTCTAATTCCTAAATTAATATTTTGATAAGCTTCTTGATTATTTGTTTATGCTTAAGTGCATTGACTAGACAACTGTGAAGACACCACAGCCAGTGTGAAAGAGAGGATTGGACTCATAAAGAAAACTTAGATATTCAATTCTTAATGTTTCATTTATGACACATGAGACACCTGGCCCTGACAGAATCTATGTGTCCTTTTATGGATTTGGGTCTTTTTAGTATACCTCTGTTTGCCCTCTACTGAACTGATCAATTTTTGGTCGAAAAATATTTAGTTAATATAAGAAGTCTGAATTACTTTTGTATCTTGCTGATTTTAATTGTATAAATGATCAGTCTTTGTATATAAGTAATTTTTTATTATTTGCAAGGAAAAAGAAAGGAACTGTGGGAGCGTAAAGCCCTAAGTAACTCTAGTTTTCTGTCTTTATAATGATAAAACTGGAAAAGCAATGTCACTACTTCTACTTTCCCCAGTCTCCATTCAAAGAAGTGACTGATGGTCTGCTTTGCACTGAGTCATGGTATTGGGAACTGAGCTATCTCTAGAAATATCTACAATCACATTTATTTCTGAAGACTTTGACACAACTGGATTTAAAGAAAACTGGTCTAGTGGTTGGCAACCCTGCCTGTGGCAAGGGGGGTGAAACTAGATGATCATTGCTGTTCTTTTCAACCCAGGCCATTCTATGATTCAATGATTCTATGATGATCAGTGAACCATGTTGCCAGTAATGGAACAAAGCTCAGAGTTCCATATGCTGTGCTGAAGCTTCTGCTTAAAGGAGACTGAAGATTGAAATTCCTAGAACTACGGAAGAATAACTTTTGATATATAGACATTCTGCCTGCATTTTAATCTCCAGGGAAATTCACTGATATACAGTGTTAGTGGGACAAACATAAATTTTTTACAGTAAGCAGACGAAAGATGGTTTTGTTTTGATTCCTTTTTTTCATCACTATTTACAAGAATCCCAACTATAATGAATGGGAGAAAATATAGGTTGCACTTGCTGTATGCAACCTGGTCACTTACAAAAAAAAAAAAAAAAGTTCAATTTACATTGGCAAAGAGGAAACAGAAGTTACAATACACTGAAATTCTTCATGTCAGACTGAAAAAACATACATTTTGAAATATTCAGCTGGATTATGTTTGAAGAATATTAGAAGAAAAAATATTTAGGAAGCCTATTTAAAATGTACTTTGCATGTTTAACATTTCTAGGTCAAATCTTTGATAGAATTTGACACAGTTCACAGATGAAGTTATTCTGCAGGAAATACAGACATTTATTATCTTGAGATGAAAGGAGAGGATCTTTTTTTGTAATTTTTTTCAATATTAAAACCTGCTTTGTTTACTTTCATTTTGATCCTACTGAGTTTTCTCATCAAATCTTTCGAAACAAATTGGTCTAAGCTTGTGTCTAACTTAGCTAAGTTCTTCAGGCTGTGCTTTTGTCAAGAAATATACAGTTTTAGACACACATGATAGACTGTTTGCAGGATACATTAATATGCTTCCAAGTGTCAGCCCTGAAGTGACTGGCCACAATTTGTATGCAAATCTGTGTCCTTTTTCAGTCCTAACTGCTATTTGCTACAATGTCAAAGGGATTGCATAACCAGGAATTTAGAAGAAAGTGGGGAGAAATCAGATTTTCACAGAATGCTCCTGTGAGAGGAAGAAAAGCAAGATGTTTTCTAAGAAGAGTTCCATTACGGCTTATTTTTGAACTATGCTTCAAGGCTTCATTTACTCTTGGGAGGTTTTCTTATTTGCTTGTTTTTCTGTTTGCTGACACAAACAACTTTGTGCTGAGGTTGCTACAAAGGTAATACATTTTTAAGAGTGTATGTTGAAAAATAGTATTTTAAGTTATTTATTTTCTTTGAATCAG
Seq C2 exon
GAAGTGAAGCGAGCTTTATCTTAAAAGTTCGTCCTCTGGAGAAGTACCCTGTGGATCTTTACTATTTAGTTGATGTCTCAGCTTCTATGCACAACAATATAGAGAAACTGAATTCCGTTGGATTTGCTTTATCAAAGAAGATGGAGAATATTTCTCTTGATTTTCGACTTGGGTTTGGATCCTATGTGGATAAAACTGTGTCACCCTATATTAGCATTCACCCAGGTAGAATCCATAACCAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010875:ENSGALT00000017677:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(14.1=98.2)
A:
NA
C2:
PF0036213=Integrin_beta=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]