DreINT0083627 @ danRer10
Intron Retention
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35681259-35682713:-
Coord C1 exon
chr11:35682572-35682713
Coord A exon
chr11:35681418-35682571
Coord C2 exon
chr11:35681259-35681417
Length
1154 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGA
5' ss Score
5.39
3' ss Seq
CACTCTCTCTTTTTCACCAGATC
3' ss Score
10.65
Exon sequences
Seq C1 exon
GTTTGTCACTAAGCTGCTGGAGGATCTCGTGTTTTTTGTAGTGGACATTCCCAACAATGGACAGGATGTGTTGGAGATCATGGTCAATAAACCCAATCGTGAACGACAGAAACTCATGAGAGAGCAGAACATCCTAAAACAA
Seq A exon
GTACGATTTAACCTACAATTTATAACTTGCAGTGGCTAAAAGACATACCTCATCATCTAAGAATGGTAATTCGGAAGGTATTTTCTATGACAAATATCTACAACAAGGATAATAAATGTTGTTATTGCTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGTTTATTATTATTATTATTATTAATTATATTGTTTAATTTTGTTTAACATTATCATATCATTGTGAAGTATTTCATTAAATGTAAACAAAAAGATGATTATTATTATTATTATTTATATTATTATTATAAAATACAAAATGCGGACTTATACATACAAAATGAAGAATACTTTGACATTGTTTATAGATGTTGTCTTGACAATGATTATAATAATAAGAAAGATAAATTATAAAATAACTTAATAAAGCATTTCTAAATCCTATTTTGAGTTTTCTTTTATTGTTATCCTTGTATTACTTACTCTACTAAGAAATTGTAATAATAATTGCAAACACTATGCCATGGTGAAATATAATGAAAGCCTTTATTTTAAATACAACTGATTCTTTAAAAGGCATTTCTGTTTGCAATTTCAAACCTAAACCTCTACACATTTCTGTGAGACAGCATGTACAGTTGCAAGAAAAAATGTTTTTATCAGCTTTACGATTATCTAATTCACAACAATAAAAAAAAACACAGCCTGCTTAATCTAATACCACACAAACATTAAATGTTTTCATCTTTATGTTGAACACAATTTATAAACATTCACTGTGCAGGGTGGGAAAAATATGTGAACAACTAGCCTAATGACTTCTCCATAAGCTAATTGGAACAGATGTTTTAGAATGTGCTTGGTTTGTTAATGCCCCATTGTGCCCATTTTTGTTATTACATGATCTGTCAAAACAAAATCAAATGAATTTTTGATGTTCATACTAGAATTCATTTAGTAAAGGTCAAAGTGTATGATCATTTTGTTTTATTGAATAAAAAGTTTATCCTTCCCAGTTGTGTGCATAAATTATGTGCAATTAAAACATTTCTGTGCATCTTAGAATTTCCATTAAGTCTTTTTTATGTTTATATCTAAAATGTCCATAAAATAGGTGAATGGAAACAGGTAAAGTCTCCACTCTCTCTTTTTCACCAG
Seq C2 exon
ATCTTCAAGCTGCTACAGGCTCCATTCACAGACAGCGGGGACGGTCCGATGCTGCGTCTGGAGGAGCTGAATGACCAGAGACACGCTCCCTTCAGGCACATCTGCCGGCTCTGCTACCGCGTCCTGCGACACTCACAGCAGGACTACAGGAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149:ENSDART00000031993:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
A:
NA
C2:
PF0136516=RYDR_ITPR=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACTAAGCTGCTGGAGGA
R:
TGGTTCTTCCTGTAGTCCTGCT
Band lengths:
297-1451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]